miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9349 3' -63.3 NC_002512.2 + 82396 0.81 0.107731
Target:  5'- ---aGCgCCGGUCGCGCCCGUCcGCAg -3'
miRNA:   3'- cgugCGgGGCCAGCGCGGGCAGuCGU- -5'
9349 3' -63.3 NC_002512.2 + 99602 0.8 0.110373
Target:  5'- gGCACGUCCCGGgcccCGCGCUCGUC-GCGg -3'
miRNA:   3'- -CGUGCGGGGCCa---GCGCGGGCAGuCGU- -5'
9349 3' -63.3 NC_002512.2 + 180439 0.78 0.161717
Target:  5'- -gGCGCCCCGGgcgGCGCCCGUCAu-- -3'
miRNA:   3'- cgUGCGGGGCCag-CGCGGGCAGUcgu -5'
9349 3' -63.3 NC_002512.2 + 191051 0.77 0.176742
Target:  5'- cGCACGUggaCCGGUCGCGCCUGgcgcuggcugugCGGCAa -3'
miRNA:   3'- -CGUGCGg--GGCCAGCGCGGGCa-----------GUCGU- -5'
9349 3' -63.3 NC_002512.2 + 146080 0.75 0.249768
Target:  5'- cGC-CGCCgCCGG-CGCGCCCGacgcgguccUCGGCGg -3'
miRNA:   3'- -CGuGCGG-GGCCaGCGCGGGC---------AGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 224725 0.74 0.266841
Target:  5'- cGC-CGCCCCGGUCGCGCCg--CuGCc -3'
miRNA:   3'- -CGuGCGGGGCCAGCGCGGgcaGuCGu -5'
9349 3' -63.3 NC_002512.2 + 157090 0.74 0.27874
Target:  5'- -gGCGCCCaCGG-CGgGCCCGUCccGGCGa -3'
miRNA:   3'- cgUGCGGG-GCCaGCgCGGGCAG--UCGU- -5'
9349 3' -63.3 NC_002512.2 + 189530 0.74 0.284845
Target:  5'- gGCuCGCCgCGGUCgGCGUCCG-CGGCAu -3'
miRNA:   3'- -CGuGCGGgGCCAG-CGCGGGCaGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 167549 0.73 0.310324
Target:  5'- aGCuGCGCCgCCaGGggGUGCCCGUCGGCu -3'
miRNA:   3'- -CG-UGCGG-GG-CCagCGCGGGCAGUCGu -5'
9349 3' -63.3 NC_002512.2 + 137935 0.73 0.316959
Target:  5'- cGCucCGCCCUGGcgaUCGCGCCCaagaccaaGUCGGCc -3'
miRNA:   3'- -CGu-GCGGGGCC---AGCGCGGG--------CAGUCGu -5'
9349 3' -63.3 NC_002512.2 + 193500 0.72 0.351725
Target:  5'- -gACGaCCUCGGUCGCGCCaaCGUCAcgguGCAc -3'
miRNA:   3'- cgUGC-GGGGCCAGCGCGG--GCAGU----CGU- -5'
9349 3' -63.3 NC_002512.2 + 181788 0.72 0.351725
Target:  5'- -aGCG-CCCGGU--UGCCCGUCAGCAg -3'
miRNA:   3'- cgUGCgGGGCCAgcGCGGGCAGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 162159 0.72 0.358995
Target:  5'- gGCACGCCgaccgcgaaagCGGcCGCGUCCGUCGGUc -3'
miRNA:   3'- -CGUGCGGg----------GCCaGCGCGGGCAGUCGu -5'
9349 3' -63.3 NC_002512.2 + 193802 0.72 0.366369
Target:  5'- cCugGCCCauuGGUCGCGCCgcuucgggGUCGGCGa -3'
miRNA:   3'- cGugCGGGg--CCAGCGCGGg-------CAGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 183963 0.72 0.373847
Target:  5'- cGCGCGCUCgGGcgUCGuCGCCUGUCGGg- -3'
miRNA:   3'- -CGUGCGGGgCC--AGC-GCGGGCAGUCgu -5'
9349 3' -63.3 NC_002512.2 + 91903 0.72 0.389111
Target:  5'- cGCACGgCCCGcUCGgGCCCGgCAcGCAg -3'
miRNA:   3'- -CGUGCgGGGCcAGCgCGGGCaGU-CGU- -5'
9349 3' -63.3 NC_002512.2 + 205020 0.71 0.404777
Target:  5'- aCGCGCCUCGGUCgGgGCCgCGUCcGCc -3'
miRNA:   3'- cGUGCGGGGCCAG-CgCGG-GCAGuCGu -5'
9349 3' -63.3 NC_002512.2 + 216179 0.71 0.404777
Target:  5'- cCGCGUCUCGGgaUCGCGCCCGUgaucaccgccgCGGCc -3'
miRNA:   3'- cGUGCGGGGCC--AGCGCGGGCA-----------GUCGu -5'
9349 3' -63.3 NC_002512.2 + 123870 0.71 0.412758
Target:  5'- cGCAC-CCCCGGcggCGcCGCCCGUUcGCc -3'
miRNA:   3'- -CGUGcGGGGCCa--GC-GCGGGCAGuCGu -5'
9349 3' -63.3 NC_002512.2 + 126825 0.71 0.420835
Target:  5'- aGUcCGUCCCGucGUCGCGCUCGUC-GCGg -3'
miRNA:   3'- -CGuGCGGGGC--CAGCGCGGGCAGuCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.