miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9349 3' -63.3 NC_002512.2 + 2228 0.66 0.683472
Target:  5'- cCGCGCUUCGuGUCuCGCCUG-CGGCAc -3'
miRNA:   3'- cGUGCGGGGC-CAGcGCGGGCaGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 35914 0.69 0.497527
Target:  5'- -aGCG-CCCGGUUGCGCCaUGUCGGa- -3'
miRNA:   3'- cgUGCgGGGCCAGCGCGG-GCAGUCgu -5'
9349 3' -63.3 NC_002512.2 + 82396 0.81 0.107731
Target:  5'- ---aGCgCCGGUCGCGCCCGUCcGCAg -3'
miRNA:   3'- cgugCGgGGCCAGCGCGGGCAGuCGU- -5'
9349 3' -63.3 NC_002512.2 + 90624 0.68 0.589248
Target:  5'- cCGCGCgCCGGgcggCGCGaCCCGgcgccgCGGCc -3'
miRNA:   3'- cGUGCGgGGCCa---GCGC-GGGCa-----GUCGu -5'
9349 3' -63.3 NC_002512.2 + 91903 0.72 0.389111
Target:  5'- cGCACGgCCCGcUCGgGCCCGgCAcGCAg -3'
miRNA:   3'- -CGUGCgGGGCcAGCgCGGGCaGU-CGU- -5'
9349 3' -63.3 NC_002512.2 + 94303 0.68 0.579875
Target:  5'- cGguCGUccaCCCGGUUGCGCCC--CGGCGc -3'
miRNA:   3'- -CguGCG---GGGCCAGCGCGGGcaGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 94905 0.68 0.579875
Target:  5'- -gGCGUCCCGGUCGCcgggcagacaGCuCCGgaucaCGGCGa -3'
miRNA:   3'- cgUGCGGGGCCAGCG----------CG-GGCa----GUCGU- -5'
9349 3' -63.3 NC_002512.2 + 99602 0.8 0.110373
Target:  5'- gGCACGUCCCGGgcccCGCGCUCGUC-GCGg -3'
miRNA:   3'- -CGUGCGGGGCCa---GCGCGGGCAGuCGU- -5'
9349 3' -63.3 NC_002512.2 + 99900 0.66 0.720518
Target:  5'- cGCgGCGCCgCCGG-CGCuCCCGgCGGUg -3'
miRNA:   3'- -CG-UGCGG-GGCCaGCGcGGGCaGUCGu -5'
9349 3' -63.3 NC_002512.2 + 100583 0.69 0.524478
Target:  5'- cGgGCGCUCgGGUggggaaacCGCGCCCG-CGGCu -3'
miRNA:   3'- -CgUGCGGGgCCA--------GCGCGGGCaGUCGu -5'
9349 3' -63.3 NC_002512.2 + 101689 0.67 0.617505
Target:  5'- --cCGuCCCCGGUCccgccgGCgGCCCGcUCGGCGa -3'
miRNA:   3'- cguGC-GGGGCCAG------CG-CGGGC-AGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 102475 0.7 0.479909
Target:  5'- gGCGCGCCCgucgCGGUgGCGguCCCGcaggCGGCGg -3'
miRNA:   3'- -CGUGCGGG----GCCAgCGC--GGGCa---GUCGU- -5'
9349 3' -63.3 NC_002512.2 + 107849 0.66 0.683472
Target:  5'- cGC-CGCCCCGGgCGUGCgCG--AGCGc -3'
miRNA:   3'- -CGuGCGGGGCCaGCGCGgGCagUCGU- -5'
9349 3' -63.3 NC_002512.2 + 112886 0.7 0.462602
Target:  5'- cGCcCGCCCUGcGU-GCGgCCGUCGGCc -3'
miRNA:   3'- -CGuGCGGGGC-CAgCGCgGGCAGUCGu -5'
9349 3' -63.3 NC_002512.2 + 117098 0.66 0.729636
Target:  5'- gGC-CGCCCUGGacccggcacaGCGgcacggggcCCCGUCGGCGg -3'
miRNA:   3'- -CGuGCGGGGCCag--------CGC---------GGGCAGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 118945 0.7 0.466037
Target:  5'- cGCugGCCCCGGUguucuccaccgagagCGCGgCCCuggugacgGUgGGCAa -3'
miRNA:   3'- -CGugCGGGGCCA---------------GCGC-GGG--------CAgUCGU- -5'
9349 3' -63.3 NC_002512.2 + 120158 0.68 0.589248
Target:  5'- cCGCGCaaCCGGcCGCGCuucCCGaUCAGCAu -3'
miRNA:   3'- cGUGCGg-GGCCaGCGCG---GGC-AGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 122089 0.7 0.488681
Target:  5'- cGCACGCgCCGGaCGCGag-GUCGGCGc -3'
miRNA:   3'- -CGUGCGgGGCCaGCGCgggCAGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 123650 0.66 0.691874
Target:  5'- aGCGCGCCgCGGUucccgcgCGCGCgCCGcCAuggccGCGg -3'
miRNA:   3'- -CGUGCGGgGCCA-------GCGCG-GGCaGU-----CGU- -5'
9349 3' -63.3 NC_002512.2 + 123870 0.71 0.412758
Target:  5'- cGCAC-CCCCGGcggCGcCGCCCGUUcGCc -3'
miRNA:   3'- -CGUGcGGGGCCa--GC-GCGGGCAGuCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.