miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9350 3' -55.2 NC_002512.2 + 205078 0.69 0.892627
Target:  5'- cUGGAGAGCgGCgGCGAUCcguCCucgggggGCGCGc -3'
miRNA:   3'- -ACCUCUCGgUGaUGCUAGu--GG-------CGUGC- -5'
9350 3' -55.2 NC_002512.2 + 213679 0.69 0.886677
Target:  5'- aGGGGAGCC-CgGCG-UCGCC-CGCGg -3'
miRNA:   3'- aCCUCUCGGuGaUGCuAGUGGcGUGC- -5'
9350 3' -55.2 NC_002512.2 + 206772 0.69 0.879862
Target:  5'- aUGGGGucGuCCAgcGCGAUCAuCCGCACGc -3'
miRNA:   3'- -ACCUCu-C-GGUgaUGCUAGU-GGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 129519 0.69 0.879862
Target:  5'- cGG-GAGCCGCguacaggACGA-CGCCGUGCu -3'
miRNA:   3'- aCCuCUCGGUGa------UGCUaGUGGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 222817 0.69 0.872837
Target:  5'- gGGAGAGCCacgGCUGCGAcuuCCG-ACGg -3'
miRNA:   3'- aCCUCUCGG---UGAUGCUaguGGCgUGC- -5'
9350 3' -55.2 NC_002512.2 + 191586 0.69 0.872837
Target:  5'- -cGAGAGCCugUuCGGUCGCgCGguCGa -3'
miRNA:   3'- acCUCUCGGugAuGCUAGUG-GCguGC- -5'
9350 3' -55.2 NC_002512.2 + 213914 0.69 0.872837
Target:  5'- gGGGGAGaucgaCCGCgGCGAgugcgacgUCGCCGCGCu -3'
miRNA:   3'- aCCUCUC-----GGUGaUGCU--------AGUGGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 143237 0.7 0.865606
Target:  5'- cGGAcgcGGCCACcGCGAUCcaccacACCGCGCc -3'
miRNA:   3'- aCCUc--UCGGUGaUGCUAG------UGGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 149293 0.7 0.865606
Target:  5'- aGGAGGGCgAgaucguCGAcCGCCGCGCGg -3'
miRNA:   3'- aCCUCUCGgUgau---GCUaGUGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 123192 0.7 0.842731
Target:  5'- cGGAGAGCCccauCgcCGAaCACCGCgACGc -3'
miRNA:   3'- aCCUCUCGGu---GauGCUaGUGGCG-UGC- -5'
9350 3' -55.2 NC_002512.2 + 130788 0.7 0.842731
Target:  5'- aGGAGGGCCGCcgACGcgCAgCaCGCGg -3'
miRNA:   3'- aCCUCUCGGUGa-UGCuaGUgGcGUGC- -5'
9350 3' -55.2 NC_002512.2 + 175580 0.7 0.834732
Target:  5'- cGGcGGGUCACcACG-UCGCCGUGCGg -3'
miRNA:   3'- aCCuCUCGGUGaUGCuAGUGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 123568 0.71 0.809709
Target:  5'- gGGAGAGCCgccgaaggcGCUGCGGgucugagaggaCGCCGCGgCGg -3'
miRNA:   3'- aCCUCUCGG---------UGAUGCUa----------GUGGCGU-GC- -5'
9350 3' -55.2 NC_002512.2 + 185039 0.71 0.80105
Target:  5'- gGGAGAGCC-CUAgGAUC-CUGgACGc -3'
miRNA:   3'- aCCUCUCGGuGAUgCUAGuGGCgUGC- -5'
9350 3' -55.2 NC_002512.2 + 227189 0.71 0.783303
Target:  5'- gGGGGAGCgGCagGCGcUC-CCGCGCGc -3'
miRNA:   3'- aCCUCUCGgUGa-UGCuAGuGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 157177 0.71 0.783303
Target:  5'- gUGGGcGGCgGCgcgACGAUCgACCGCAUGa -3'
miRNA:   3'- -ACCUcUCGgUGa--UGCUAG-UGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 131672 0.71 0.783303
Target:  5'- aGGAGGGCCGCgaggGCGGUgaGCCcggaGCGCa -3'
miRNA:   3'- aCCUCUCGGUGa---UGCUAg-UGG----CGUGc -5'
9350 3' -55.2 NC_002512.2 + 100496 0.72 0.765037
Target:  5'- uUGGGGAGgCCGCggucguCGAgCAcCCGCACGa -3'
miRNA:   3'- -ACCUCUC-GGUGau----GCUaGU-GGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 149008 0.72 0.755731
Target:  5'- cGGGGGGCCGCcGCGG--ACCGCcCGa -3'
miRNA:   3'- aCCUCUCGGUGaUGCUagUGGCGuGC- -5'
9350 3' -55.2 NC_002512.2 + 124080 0.72 0.746321
Target:  5'- cGGAGAGCagGCUgaagACGGaCGCCGCGCc -3'
miRNA:   3'- aCCUCUCGg-UGA----UGCUaGUGGCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.