miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9350 3' -55.2 NC_002512.2 + 123645 0.78 0.419753
Target:  5'- gGGAGAGCgCGCcGCGGUUcCCGCGCGc -3'
miRNA:   3'- aCCUCUCG-GUGaUGCUAGuGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 122834 0.78 0.445979
Target:  5'- aUGGAG-GCCGCgACGGUCGCCGCcCu -3'
miRNA:   3'- -ACCUCuCGGUGaUGCUAGUGGCGuGc -5'
9350 3' -55.2 NC_002512.2 + 175534 0.77 0.491625
Target:  5'- cUGGAGgguGGCCGCgaucgagGCGAUCACCGuCACc -3'
miRNA:   3'- -ACCUC---UCGGUGa------UGCUAGUGGC-GUGc -5'
9350 3' -55.2 NC_002512.2 + 152401 0.76 0.539313
Target:  5'- gGGGGAGcCCACaggGCGAUCGCUGCGu- -3'
miRNA:   3'- aCCUCUC-GGUGa--UGCUAGUGGCGUgc -5'
9350 3' -55.2 NC_002512.2 + 156564 0.76 0.549048
Target:  5'- gGGAGAGCCuGCUGCGcUCGgUGCGCu -3'
miRNA:   3'- aCCUCUCGG-UGAUGCuAGUgGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 187649 0.75 0.568675
Target:  5'- aUGGAGGGCgGCggccACGGUCACgGuCACGg -3'
miRNA:   3'- -ACCUCUCGgUGa---UGCUAGUGgC-GUGC- -5'
9350 3' -55.2 NC_002512.2 + 127181 0.74 0.648372
Target:  5'- aGGGuccGGGCCACUGCG-UCGCCGaCGCc -3'
miRNA:   3'- aCCU---CUCGGUGAUGCuAGUGGC-GUGc -5'
9350 3' -55.2 NC_002512.2 + 119476 0.73 0.698008
Target:  5'- cGGAGcAGCCGCUguucgugguguGCGAcaucUCGCCGgACGa -3'
miRNA:   3'- aCCUC-UCGGUGA-----------UGCU----AGUGGCgUGC- -5'
9350 3' -55.2 NC_002512.2 + 45606 0.73 0.717551
Target:  5'- gUGGAGAGUCuauCUACGAg-ACCGUGCa -3'
miRNA:   3'- -ACCUCUCGGu--GAUGCUagUGGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 109934 0.73 0.727222
Target:  5'- cUGGAGAGCUcggagACgGCGAUCgcggACUGCGCGu -3'
miRNA:   3'- -ACCUCUCGG-----UGaUGCUAG----UGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 107223 0.73 0.727222
Target:  5'- cGGGGAGCC---GCGGUCACCGU-CGu -3'
miRNA:   3'- aCCUCUCGGugaUGCUAGUGGCGuGC- -5'
9350 3' -55.2 NC_002512.2 + 124080 0.72 0.746321
Target:  5'- cGGAGAGCagGCUgaagACGGaCGCCGCGCc -3'
miRNA:   3'- aCCUCUCGg-UGA----UGCUaGUGGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 149008 0.72 0.755731
Target:  5'- cGGGGGGCCGCcGCGG--ACCGCcCGa -3'
miRNA:   3'- aCCUCUCGGUGaUGCUagUGGCGuGC- -5'
9350 3' -55.2 NC_002512.2 + 100496 0.72 0.765037
Target:  5'- uUGGGGAGgCCGCggucguCGAgCAcCCGCACGa -3'
miRNA:   3'- -ACCUCUC-GGUGau----GCUaGU-GGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 227189 0.71 0.783303
Target:  5'- gGGGGAGCgGCagGCGcUC-CCGCGCGc -3'
miRNA:   3'- aCCUCUCGgUGa-UGCuAGuGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 157177 0.71 0.783303
Target:  5'- gUGGGcGGCgGCgcgACGAUCgACCGCAUGa -3'
miRNA:   3'- -ACCUcUCGgUGa--UGCUAG-UGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 131672 0.71 0.783303
Target:  5'- aGGAGGGCCGCgaggGCGGUgaGCCcggaGCGCa -3'
miRNA:   3'- aCCUCUCGGUGa---UGCUAg-UGG----CGUGc -5'
9350 3' -55.2 NC_002512.2 + 185039 0.71 0.80105
Target:  5'- gGGAGAGCC-CUAgGAUC-CUGgACGc -3'
miRNA:   3'- aCCUCUCGGuGAUgCUAGuGGCgUGC- -5'
9350 3' -55.2 NC_002512.2 + 123568 0.71 0.809709
Target:  5'- gGGAGAGCCgccgaaggcGCUGCGGgucugagaggaCGCCGCGgCGg -3'
miRNA:   3'- aCCUCUCGG---------UGAUGCUa----------GUGGCGU-GC- -5'
9350 3' -55.2 NC_002512.2 + 175580 0.7 0.834732
Target:  5'- cGGcGGGUCACcACG-UCGCCGUGCGg -3'
miRNA:   3'- aCCuCUCGGUGaUGCuAGUGGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.