miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9350 3' -55.2 NC_002512.2 + 142 0.68 0.917467
Target:  5'- cGGGGAGCCGg-GCGGggCGCCG-GCGg -3'
miRNA:   3'- aCCUCUCGGUgaUGCUa-GUGGCgUGC- -5'
9350 3' -55.2 NC_002512.2 + 45606 0.73 0.717551
Target:  5'- gUGGAGAGUCuauCUACGAg-ACCGUGCa -3'
miRNA:   3'- -ACCUCUCGGu--GAUGCUagUGGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 89335 0.66 0.962139
Target:  5'- cGGAGAGCUcguGCaccuCGGUgGCCGCGg- -3'
miRNA:   3'- aCCUCUCGG---UGau--GCUAgUGGCGUgc -5'
9350 3' -55.2 NC_002512.2 + 98129 0.68 0.916906
Target:  5'- cGGGGcgcuggucgucgcGGCCGCccgccccgGCGGUCGCCGCGg- -3'
miRNA:   3'- aCCUC-------------UCGGUGa-------UGCUAGUGGCGUgc -5'
9350 3' -55.2 NC_002512.2 + 100496 0.72 0.765037
Target:  5'- uUGGGGAGgCCGCggucguCGAgCAcCCGCACGa -3'
miRNA:   3'- -ACCUCUC-GGUGau----GCUaGU-GGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 101498 0.67 0.936615
Target:  5'- cGGAcGAGUCGCUcuccccgucguagcACaGGgggCACCGCGCGa -3'
miRNA:   3'- aCCU-CUCGGUGA--------------UG-CUa--GUGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 102470 0.67 0.954977
Target:  5'- aGGAGGGCgCGCccgucgcggugGCGGUC-CCGCAgGc -3'
miRNA:   3'- aCCUCUCG-GUGa----------UGCUAGuGGCGUgC- -5'
9350 3' -55.2 NC_002512.2 + 103712 0.66 0.962139
Target:  5'- aGGGGGcGCCGCcAUGAUCcugaaccggACCGCgGCGa -3'
miRNA:   3'- aCCUCU-CGGUGaUGCUAG---------UGGCG-UGC- -5'
9350 3' -55.2 NC_002512.2 + 107223 0.73 0.727222
Target:  5'- cGGGGAGCC---GCGGUCACCGU-CGu -3'
miRNA:   3'- aCCUCUCGGugaUGCUAGUGGCGuGC- -5'
9350 3' -55.2 NC_002512.2 + 108799 0.68 0.911756
Target:  5'- ---cGGGCCGCUGCGggCGCUGUuccGCGa -3'
miRNA:   3'- accuCUCGGUGAUGCuaGUGGCG---UGC- -5'
9350 3' -55.2 NC_002512.2 + 109934 0.73 0.727222
Target:  5'- cUGGAGAGCUcggagACgGCGAUCgcggACUGCGCGu -3'
miRNA:   3'- -ACCUCUCGG-----UGaUGCUAG----UGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 111788 0.66 0.971333
Target:  5'- cGGccGGuCCGC-GCGGUCGCCGC-CGg -3'
miRNA:   3'- aCCucUC-GGUGaUGCUAGUGGCGuGC- -5'
9350 3' -55.2 NC_002512.2 + 112047 0.69 0.893278
Target:  5'- uUGGccAGCCGCgugcCGAUCAgCGCGCa -3'
miRNA:   3'- -ACCucUCGGUGau--GCUAGUgGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 113070 0.67 0.954977
Target:  5'- -cGAGGGCCAg-GCGGUCGacgaugCGCACGu -3'
miRNA:   3'- acCUCUCGGUgaUGCUAGUg-----GCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 113267 0.68 0.917467
Target:  5'- aGGGGGGCgGCcgGCGGggcaGCCGCGgCGg -3'
miRNA:   3'- aCCUCUCGgUGa-UGCUag--UGGCGU-GC- -5'
9350 3' -55.2 NC_002512.2 + 116678 0.66 0.962139
Target:  5'- cGGAccgcGAGCCGCUGgcCGA-CGCCGCu-- -3'
miRNA:   3'- aCCU----CUCGGUGAU--GCUaGUGGCGugc -5'
9350 3' -55.2 NC_002512.2 + 118412 0.67 0.954977
Target:  5'- cUGGAGAGCCaACUGa-AggGCCGgGCGa -3'
miRNA:   3'- -ACCUCUCGG-UGAUgcUagUGGCgUGC- -5'
9350 3' -55.2 NC_002512.2 + 119476 0.73 0.698008
Target:  5'- cGGAGcAGCCGCUguucgugguguGCGAcaucUCGCCGgACGa -3'
miRNA:   3'- aCCUC-UCGGUGA-----------UGCU----AGUGGCgUGC- -5'
9350 3' -55.2 NC_002512.2 + 120250 0.67 0.958664
Target:  5'- gUGGAGGGCCuACccGCGGg-ACCGC-CGg -3'
miRNA:   3'- -ACCUCUCGG-UGa-UGCUagUGGCGuGC- -5'
9350 3' -55.2 NC_002512.2 + 121385 0.67 0.946949
Target:  5'- aGGAGGGCgACggccggACGGa-GCCGCGCc -3'
miRNA:   3'- aCCUCUCGgUGa-----UGCUagUGGCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.