miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9350 5' -59.3 NC_002512.2 + 152684 0.78 0.269218
Target:  5'- gGCCG-GCGGC-CGGUCUCGucGCGUCCc -3'
miRNA:   3'- -CGGCaCGUCGcGCCAGAGC--UGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 209556 0.76 0.356872
Target:  5'- aUCGUcucGgAGCGCGGUCUCGACGgcUCCUc -3'
miRNA:   3'- cGGCA---CgUCGCGCCAGAGCUGC--AGGA- -5'
9350 5' -59.3 NC_002512.2 + 221473 0.75 0.395536
Target:  5'- gGCCGcGguGCGCGuuccuggcgCUCGGCGUCCUa -3'
miRNA:   3'- -CGGCaCguCGCGCca-------GAGCUGCAGGA- -5'
9350 5' -59.3 NC_002512.2 + 129540 0.74 0.471536
Target:  5'- cGCCGUGCuGCGUGG-C-CGGCGcCCg -3'
miRNA:   3'- -CGGCACGuCGCGCCaGaGCUGCaGGa -5'
9350 5' -59.3 NC_002512.2 + 182453 0.73 0.48942
Target:  5'- cGCCGUGCgGGCGUGGUgCUCGugG-Ca- -3'
miRNA:   3'- -CGGCACG-UCGCGCCA-GAGCugCaGga -5'
9350 5' -59.3 NC_002512.2 + 155640 0.73 0.526091
Target:  5'- aGCCG-GCGGCGC---UUCGGCGUCCg -3'
miRNA:   3'- -CGGCaCGUCGCGccaGAGCUGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 178241 0.71 0.592453
Target:  5'- uCCGggGaCGGCGCGGUCUCcGgGUCCg -3'
miRNA:   3'- cGGCa-C-GUCGCGCCAGAGcUgCAGGa -5'
9350 5' -59.3 NC_002512.2 + 155261 0.71 0.63106
Target:  5'- gGCCGUcGC-GCgGCGGUCUCG-CGcUCCg -3'
miRNA:   3'- -CGGCA-CGuCG-CGCCAGAGCuGC-AGGa -5'
9350 5' -59.3 NC_002512.2 + 181579 0.7 0.637829
Target:  5'- uCCGUcugcggcggcagggGCGGCG-GGUCcgCGACGUCCUc -3'
miRNA:   3'- cGGCA--------------CGUCGCgCCAGa-GCUGCAGGA- -5'
9350 5' -59.3 NC_002512.2 + 188649 0.7 0.640729
Target:  5'- cGCCGgcgGCGGCgGCGGcC-CGuCGUCCg -3'
miRNA:   3'- -CGGCa--CGUCG-CGCCaGaGCuGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 189066 0.7 0.650393
Target:  5'- gGCCG-GCGGCgcucucgacgGCGaGUCUccgCGACGUCCg -3'
miRNA:   3'- -CGGCaCGUCG----------CGC-CAGA---GCUGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 184545 0.7 0.669674
Target:  5'- aGCCG-GCGGCGCGGgC-CGGCGgacggCCc -3'
miRNA:   3'- -CGGCaCGUCGCGCCaGaGCUGCa----GGa -5'
9350 5' -59.3 NC_002512.2 + 190208 0.7 0.679278
Target:  5'- gGUCG-GCGGCGCGGUCguccggGACGgCCa -3'
miRNA:   3'- -CGGCaCGUCGCGCCAGag----CUGCaGGa -5'
9350 5' -59.3 NC_002512.2 + 89552 0.7 0.688846
Target:  5'- cUCGUGCAGCGCGGU---GAaguaGUCCUu -3'
miRNA:   3'- cGGCACGUCGCGCCAgagCUg---CAGGA- -5'
9350 5' -59.3 NC_002512.2 + 102900 0.69 0.698373
Target:  5'- aCCGUGCgccuGGCGCGG--UCGACGgCCa -3'
miRNA:   3'- cGGCACG----UCGCGCCagAGCUGCaGGa -5'
9350 5' -59.3 NC_002512.2 + 141782 0.69 0.70785
Target:  5'- aCCGUGauCAGCcccGCGGUgUCGGCGaUCCg -3'
miRNA:   3'- cGGCAC--GUCG---CGCCAgAGCUGC-AGGa -5'
9350 5' -59.3 NC_002512.2 + 101437 0.69 0.70785
Target:  5'- gGCCG-GCGGCGCGG---CGACG-CCg -3'
miRNA:   3'- -CGGCaCGUCGCGCCagaGCUGCaGGa -5'
9350 5' -59.3 NC_002512.2 + 169554 0.69 0.726625
Target:  5'- cCCG-GCGGCGUGGccuucgccggcgUCUCcGCGUCCg -3'
miRNA:   3'- cGGCaCGUCGCGCC------------AGAGcUGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 5894 0.68 0.754222
Target:  5'- cGCUcUGCucaauGCuGCGGUCUCGGCuUCCg -3'
miRNA:   3'- -CGGcACGu----CG-CGCCAGAGCUGcAGGa -5'
9350 5' -59.3 NC_002512.2 + 202125 0.68 0.754222
Target:  5'- aGCUG-GUGGCGcCGGUCUCGGcCG-CCg -3'
miRNA:   3'- -CGGCaCGUCGC-GCCAGAGCU-GCaGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.