miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9350 5' -59.3 NC_002512.2 + 5894 0.68 0.754222
Target:  5'- cGCUcUGCucaauGCuGCGGUCUCGGCuUCCg -3'
miRNA:   3'- -CGGcACGu----CG-CGCCAGAGCUGcAGGa -5'
9350 5' -59.3 NC_002512.2 + 33081 0.66 0.881336
Target:  5'- aCCG-GCGcGCGCGGUCaUCGGgaccauaucucgcUGUCCg -3'
miRNA:   3'- cGGCaCGU-CGCGCCAG-AGCU-------------GCAGGa -5'
9350 5' -59.3 NC_002512.2 + 89552 0.7 0.688846
Target:  5'- cUCGUGCAGCGCGGU---GAaguaGUCCUu -3'
miRNA:   3'- cGGCACGUCGCGCCAgagCUg---CAGGA- -5'
9350 5' -59.3 NC_002512.2 + 89641 0.67 0.805779
Target:  5'- aGCCGacgggGCGGacgaaGCGGUCgacguacUCGACGUgCCUc -3'
miRNA:   3'- -CGGCa----CGUCg----CGCCAG-------AGCUGCA-GGA- -5'
9350 5' -59.3 NC_002512.2 + 90644 0.68 0.789637
Target:  5'- cCCGgcgccGCGGcCGCGGUCUCGGaGUCg- -3'
miRNA:   3'- cGGCa----CGUC-GCGCCAGAGCUgCAGga -5'
9350 5' -59.3 NC_002512.2 + 91876 0.66 0.875273
Target:  5'- cGCCGUcCGGCGCGGg--CGGCGg--- -3'
miRNA:   3'- -CGGCAcGUCGCGCCagaGCUGCagga -5'
9350 5' -59.3 NC_002512.2 + 92543 0.67 0.814896
Target:  5'- gGCCGcgGCGGcCGCGGcgaCGACGUCg- -3'
miRNA:   3'- -CGGCa-CGUC-GCGCCagaGCUGCAGga -5'
9350 5' -59.3 NC_002512.2 + 95571 0.67 0.838822
Target:  5'- uCCGU-CGGCGcCGGcCccggCGACGUCCUc -3'
miRNA:   3'- cGGCAcGUCGC-GCCaGa---GCUGCAGGA- -5'
9350 5' -59.3 NC_002512.2 + 101437 0.69 0.70785
Target:  5'- gGCCG-GCGGCGCGG---CGACG-CCg -3'
miRNA:   3'- -CGGCaCGUCGCGCCagaGCUGCaGGa -5'
9350 5' -59.3 NC_002512.2 + 102900 0.69 0.698373
Target:  5'- aCCGUGCgccuGGCGCGG--UCGACGgCCa -3'
miRNA:   3'- cGGCACG----UCGCGCCagAGCUGCaGGa -5'
9350 5' -59.3 NC_002512.2 + 105666 0.66 0.888529
Target:  5'- aGCCGcagcaGaCGGCGCGGUaCUCG-CGgugCCUc -3'
miRNA:   3'- -CGGCa----C-GUCGCGCCA-GAGCuGCa--GGA- -5'
9350 5' -59.3 NC_002512.2 + 107220 0.67 0.806615
Target:  5'- gGCCGgGgAGcCGCGGUCacCGuCGUCCg -3'
miRNA:   3'- -CGGCaCgUC-GCGCCAGa-GCuGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 117966 0.66 0.888529
Target:  5'- aGCUGUuccgGCAcccgaacaacccGCGCGGccgCUCGuCGUCCa -3'
miRNA:   3'- -CGGCA----CGU------------CGCGCCa--GAGCuGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 129540 0.74 0.471536
Target:  5'- cGCCGUGCuGCGUGG-C-CGGCGcCCg -3'
miRNA:   3'- -CGGCACGuCGCGCCaGaGCUGCaGGa -5'
9350 5' -59.3 NC_002512.2 + 131205 0.67 0.831006
Target:  5'- aGUCGUGC-GCGgccaGGcgCUCGACGUCg- -3'
miRNA:   3'- -CGGCACGuCGCg---CCa-GAGCUGCAGga -5'
9350 5' -59.3 NC_002512.2 + 131300 0.67 0.838822
Target:  5'- -aCGUGCAGCGCGGa--CGACccgCCg -3'
miRNA:   3'- cgGCACGUCGCGCCagaGCUGca-GGa -5'
9350 5' -59.3 NC_002512.2 + 132735 0.66 0.888529
Target:  5'- uGCCGcaggcGCAGCGCGG---CGuCGUCCc -3'
miRNA:   3'- -CGGCa----CGUCGCGCCagaGCuGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 141782 0.69 0.70785
Target:  5'- aCCGUGauCAGCcccGCGGUgUCGGCGaUCCg -3'
miRNA:   3'- cGGCAC--GUCG---CGCCAgAGCUGC-AGGa -5'
9350 5' -59.3 NC_002512.2 + 146178 0.68 0.772153
Target:  5'- uGCCGcGCGGCaCGGUCgcccugggcUCGACGaCCg -3'
miRNA:   3'- -CGGCaCGUCGcGCCAG---------AGCUGCaGGa -5'
9350 5' -59.3 NC_002512.2 + 150654 0.67 0.846471
Target:  5'- cGCUGcGCAGCuCGaGcCUCGAgGUCCg -3'
miRNA:   3'- -CGGCaCGUCGcGC-CaGAGCUgCAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.