miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9351 5' -63 NC_002512.2 + 184513 0.67 0.723813
Target:  5'- gCCCGCGUccucgucgcagcagUCgCGGGgucagcCGGCGGCGcGGGc -3'
miRNA:   3'- -GGGCGCG--------------AG-GCCCa-----GCUGCUGC-CCCu -5'
9351 5' -63 NC_002512.2 + 109822 0.67 0.718415
Target:  5'- cCCCGCGUUcacgucgaaccgCCGGGcgucggggaccggcgUGGCGGCGGuGGGg -3'
miRNA:   3'- -GGGCGCGA------------GGCCCa--------------GCUGCUGCC-CCU- -5'
9351 5' -63 NC_002512.2 + 229575 0.67 0.717513
Target:  5'- -gCGCGCgCCGGGagG--GACGGGGGc -3'
miRNA:   3'- ggGCGCGaGGCCCagCugCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 204905 0.67 0.717513
Target:  5'- --aGCGgUCCuGGUCGgguGACGGGGAc -3'
miRNA:   3'- gggCGCgAGGcCCAGCug-CUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 172 0.67 0.717513
Target:  5'- -gCGCGCgCCGGGagG--GACGGGGGc -3'
miRNA:   3'- ggGCGCGaGGCCCagCugCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 108423 0.67 0.708463
Target:  5'- gUCUGCGCcgcCCGGGgcCGGgGGcCGGGGGg -3'
miRNA:   3'- -GGGCGCGa--GGCCCa-GCUgCU-GCCCCU- -5'
9351 5' -63 NC_002512.2 + 228706 0.67 0.708463
Target:  5'- uCUCGUGCUCCGuGUCG-CG--GGGGAa -3'
miRNA:   3'- -GGGCGCGAGGCcCAGCuGCugCCCCU- -5'
9351 5' -63 NC_002512.2 + 74574 0.67 0.708463
Target:  5'- aCCUggGCGCUCUGGuGcUCGAgGcCGGGGc -3'
miRNA:   3'- -GGG--CGCGAGGCC-C-AGCUgCuGCCCCu -5'
9351 5' -63 NC_002512.2 + 75673 0.67 0.708463
Target:  5'- gCCGCGCga-GaGaCGACGAUGGGGGg -3'
miRNA:   3'- gGGCGCGaggCcCaGCUGCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 183962 0.67 0.708463
Target:  5'- aCgCGCGCUCgGGcGUCGuCGccuguCGGGGc -3'
miRNA:   3'- -GgGCGCGAGgCC-CAGCuGCu----GCCCCu -5'
9351 5' -63 NC_002512.2 + 212825 0.67 0.708463
Target:  5'- uUCCGCGCcgCCGGGguugGGCG-CGGGc- -3'
miRNA:   3'- -GGGCGCGa-GGCCCag--CUGCuGCCCcu -5'
9351 5' -63 NC_002512.2 + 201904 0.67 0.708463
Target:  5'- cCCCGCGCcggaaucucgcCCGGccgcccaUCGGCGACGGGc- -3'
miRNA:   3'- -GGGCGCGa----------GGCCc------AGCUGCUGCCCcu -5'
9351 5' -63 NC_002512.2 + 199457 0.67 0.699361
Target:  5'- gCCCGCGUUCaGGGccgCGACGACGc--- -3'
miRNA:   3'- -GGGCGCGAGgCCCa--GCUGCUGCcccu -5'
9351 5' -63 NC_002512.2 + 223809 0.67 0.699361
Target:  5'- gCgGCGaccgCCGGGaCGACGACggcgcgucggaGGGGAa -3'
miRNA:   3'- gGgCGCga--GGCCCaGCUGCUG-----------CCCCU- -5'
9351 5' -63 NC_002512.2 + 120789 0.67 0.699361
Target:  5'- cCUgGCGCUgacggccaCGGuGUCGACGgaccuggcgcGCGGGGAc -3'
miRNA:   3'- -GGgCGCGAg-------GCC-CAGCUGC----------UGCCCCU- -5'
9351 5' -63 NC_002512.2 + 155068 0.67 0.699361
Target:  5'- uUCGCGCgCgGGGUCguGACGuuCGGGGu -3'
miRNA:   3'- gGGCGCGaGgCCCAG--CUGCu-GCCCCu -5'
9351 5' -63 NC_002512.2 + 219205 0.67 0.699361
Target:  5'- aCCCGCuGCacugCCGGGccggccUCGGCGAgGucGGGAu -3'
miRNA:   3'- -GGGCG-CGa---GGCCC------AGCUGCUgC--CCCU- -5'
9351 5' -63 NC_002512.2 + 207578 0.67 0.690211
Target:  5'- cCUCGCGCUCCccucucccuGGccugCGACGGCGGcGGc -3'
miRNA:   3'- -GGGCGCGAGG---------CCca--GCUGCUGCC-CCu -5'
9351 5' -63 NC_002512.2 + 202192 0.67 0.689294
Target:  5'- aCgCGCGUUCCGGaUCGcCGACGgacccgcGGGAu -3'
miRNA:   3'- -GgGCGCGAGGCCcAGCuGCUGC-------CCCU- -5'
9351 5' -63 NC_002512.2 + 192596 0.67 0.681022
Target:  5'- uCCCGCuGCUgCGGcG-CGcGCGGCGGGcGAc -3'
miRNA:   3'- -GGGCG-CGAgGCC-CaGC-UGCUGCCC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.