miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9351 5' -63 NC_002512.2 + 198151 0.83 0.098484
Target:  5'- cCCCGCGCgggCCGGGUCGGCGccggcCGGcGGAc -3'
miRNA:   3'- -GGGCGCGa--GGCCCAGCUGCu----GCC-CCU- -5'
9351 5' -63 NC_002512.2 + 112950 0.82 0.105812
Target:  5'- gCCCGCGgaCCGGGUCGAaguCGAagcCGGGGAc -3'
miRNA:   3'- -GGGCGCgaGGCCCAGCU---GCU---GCCCCU- -5'
9351 5' -63 NC_002512.2 + 146734 0.8 0.134095
Target:  5'- gCCGCgGCcgCCGGGcccgacgaccUCGACGACGGGGAc -3'
miRNA:   3'- gGGCG-CGa-GGCCC----------AGCUGCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 191249 0.78 0.198452
Target:  5'- aCCCGCGgaCagguagagagggCGGGgaggCGGCGACGGGGAg -3'
miRNA:   3'- -GGGCGCgaG------------GCCCa---GCUGCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 127155 0.76 0.247823
Target:  5'- gCgCGCGCUCCGGGUCGAaguagGGCaGGGu -3'
miRNA:   3'- -GgGCGCGAGGCCCAGCUg----CUGcCCCu -5'
9351 5' -63 NC_002512.2 + 4729 0.76 0.253283
Target:  5'- uCCCG-GCUCCGGGcaugcgUCGuCGACGGcGGAa -3'
miRNA:   3'- -GGGCgCGAGGCCC------AGCuGCUGCC-CCU- -5'
9351 5' -63 NC_002512.2 + 166437 0.76 0.255494
Target:  5'- cCCCGCcgucCUCCGGGggCGACGgcgccgggcucgaggGCGGGGAc -3'
miRNA:   3'- -GGGCGc---GAGGCCCa-GCUGC---------------UGCCCCU- -5'
9351 5' -63 NC_002512.2 + 119766 0.76 0.258841
Target:  5'- -gCGaCGCgUCGcGGUCGACGGCGGGGAc -3'
miRNA:   3'- ggGC-GCGaGGC-CCAGCUGCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 156433 0.76 0.268519
Target:  5'- gUCCGCggccgggcugggggGCUCCGGG--GGCGGCGGGGGa -3'
miRNA:   3'- -GGGCG--------------CGAGGCCCagCUGCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 227091 0.76 0.270257
Target:  5'- uCCCGCcggccGCcggCCGGGUCGGgcucaGACGGGGGa -3'
miRNA:   3'- -GGGCG-----CGa--GGCCCAGCUg----CUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 221069 0.75 0.276115
Target:  5'- gCCCaaGCUCCGGcGgcggaaCGGCGugGGGGAc -3'
miRNA:   3'- -GGGcgCGAGGCC-Ca-----GCUGCugCCCCU- -5'
9351 5' -63 NC_002512.2 + 155015 0.75 0.278487
Target:  5'- gCCCGuCGUcCCGGGUgCGguuccggagcggaucGCGACGGGGAg -3'
miRNA:   3'- -GGGC-GCGaGGCCCA-GC---------------UGCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 148461 0.74 0.319973
Target:  5'- cCCCGCGggaCGGaGccgCGACGGCGGGGAg -3'
miRNA:   3'- -GGGCGCgagGCC-Ca--GCUGCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 93722 0.74 0.326649
Target:  5'- gCCGCGCggCGGaUCGACgggGACGGGGAc -3'
miRNA:   3'- gGGCGCGagGCCcAGCUG---CUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 196156 0.74 0.347292
Target:  5'- cUCCuCGCUCC-GGUCGACGAgGGGcGAg -3'
miRNA:   3'- -GGGcGCGAGGcCCAGCUGCUgCCC-CU- -5'
9351 5' -63 NC_002512.2 + 87660 0.73 0.376238
Target:  5'- uCCCGCGUUCCGcgaaGG-CGACGACGucgagaccgacGGGAc -3'
miRNA:   3'- -GGGCGCGAGGC----CCaGCUGCUGC-----------CCCU- -5'
9351 5' -63 NC_002512.2 + 146693 0.73 0.382219
Target:  5'- cCCCGCGCgcggacggcgaCGGaGaCGACGGCGGGGc -3'
miRNA:   3'- -GGGCGCGag---------GCC-CaGCUGCUGCCCCu -5'
9351 5' -63 NC_002512.2 + 128277 0.73 0.39437
Target:  5'- uCCCG-GCgCCGGGcCGACGgccgcccgcacgaccGCGGGGAc -3'
miRNA:   3'- -GGGCgCGaGGCCCaGCUGC---------------UGCCCCU- -5'
9351 5' -63 NC_002512.2 + 226180 0.73 0.398991
Target:  5'- aCCCGgggaGCgaCCGGGUCGACcuccguCGGGGAc -3'
miRNA:   3'- -GGGCg---CGa-GGCCCAGCUGcu----GCCCCU- -5'
9351 5' -63 NC_002512.2 + 183485 0.73 0.398991
Target:  5'- gCCGUGCUgCGGGcCGccuacggccGCGAgGGGGAg -3'
miRNA:   3'- gGGCGCGAgGCCCaGC---------UGCUgCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.