miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9351 5' -63 NC_002512.2 + 172 0.67 0.717513
Target:  5'- -gCGCGCgCCGGGagG--GACGGGGGc -3'
miRNA:   3'- ggGCGCGaGGCCCagCugCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 4354 0.66 0.778789
Target:  5'- cUCgGCGUUCCGGGUaaGAcCGACuGGGu -3'
miRNA:   3'- -GGgCGCGAGGCCCAg-CU-GCUGcCCCu -5'
9351 5' -63 NC_002512.2 + 4729 0.76 0.253283
Target:  5'- uCCCG-GCUCCGGGcaugcgUCGuCGACGGcGGAa -3'
miRNA:   3'- -GGGCgCGAGGCCC------AGCuGCUGCC-CCU- -5'
9351 5' -63 NC_002512.2 + 39697 0.68 0.643997
Target:  5'- aCCGCGCUagaacCCGGGaCGuuCGACGaGGAu -3'
miRNA:   3'- gGGCGCGA-----GGCCCaGCu-GCUGCcCCU- -5'
9351 5' -63 NC_002512.2 + 41519 0.68 0.643997
Target:  5'- uCCCGUGCggcaacUCGGGUCucGCGACGcGGAa -3'
miRNA:   3'- -GGGCGCGa-----GGCCCAGc-UGCUGCcCCU- -5'
9351 5' -63 NC_002512.2 + 53365 0.66 0.770305
Target:  5'- cUCCGCacauagaggacGCUCCGGagacCGAgGACGaGGGAc -3'
miRNA:   3'- -GGGCG-----------CGAGGCCca--GCUgCUGC-CCCU- -5'
9351 5' -63 NC_002512.2 + 55995 0.68 0.66255
Target:  5'- uCCCGaCGUaUCaaggGGGUCGuuauuCGACGGGGu -3'
miRNA:   3'- -GGGC-GCG-AGg---CCCAGCu----GCUGCCCCu -5'
9351 5' -63 NC_002512.2 + 74574 0.67 0.708463
Target:  5'- aCCUggGCGCUCUGGuGcUCGAgGcCGGGGc -3'
miRNA:   3'- -GGG--CGCGAGGCC-C-AGCUgCuGCCCCu -5'
9351 5' -63 NC_002512.2 + 75673 0.67 0.708463
Target:  5'- gCCGCGCga-GaGaCGACGAUGGGGGg -3'
miRNA:   3'- gGGCGCGaggCcCaGCUGCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 75771 0.69 0.587419
Target:  5'- aCCGCGgagcCCGGGagGACGgggcagaGCGGGGGa -3'
miRNA:   3'- gGGCGCga--GGCCCagCUGC-------UGCCCCU- -5'
9351 5' -63 NC_002512.2 + 77484 0.69 0.569942
Target:  5'- uCCCGCGCacgcucgcCCGcGUCGaacaauGCGACGGGGc -3'
miRNA:   3'- -GGGCGCGa-------GGCcCAGC------UGCUGCCCCu -5'
9351 5' -63 NC_002512.2 + 81821 0.66 0.770305
Target:  5'- gCCGCGagguCUCCGagaGGaCGACGACgagcgaGGGGAu -3'
miRNA:   3'- gGGCGC----GAGGC---CCaGCUGCUG------CCCCU- -5'
9351 5' -63 NC_002512.2 + 82236 0.69 0.579126
Target:  5'- cCCCGCGaggaGGGaugCGAagaGGCGGGGAg -3'
miRNA:   3'- -GGGCGCgaggCCCa--GCUg--CUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 82361 0.7 0.524653
Target:  5'- uUCGCGCcucgcgCCGGGaUCGGCGggACGGGaGAa -3'
miRNA:   3'- gGGCGCGa-----GGCCC-AGCUGC--UGCCC-CU- -5'
9351 5' -63 NC_002512.2 + 87660 0.73 0.376238
Target:  5'- uCCCGCGUUCCGcgaaGG-CGACGACGucgagaccgacGGGAc -3'
miRNA:   3'- -GGGCGCGAGGC----CCaGCUGCUGC-----------CCCU- -5'
9351 5' -63 NC_002512.2 + 90622 0.69 0.616125
Target:  5'- cCCCGCGCgCCGGG-CGGCGcgacccggcgccGCGGccgcggucucGGAg -3'
miRNA:   3'- -GGGCGCGaGGCCCaGCUGC------------UGCC----------CCU- -5'
9351 5' -63 NC_002512.2 + 92654 0.66 0.734536
Target:  5'- aCCCGCGCggaUCCGGGaCGgccgcccGCGcCGGGc- -3'
miRNA:   3'- -GGGCGCG---AGGCCCaGC-------UGCuGCCCcu -5'
9351 5' -63 NC_002512.2 + 92737 0.68 0.661624
Target:  5'- -gCGCGCUCgguccgaUGGcGcCGACGACGGGcGAc -3'
miRNA:   3'- ggGCGCGAG-------GCC-CaGCUGCUGCCC-CU- -5'
9351 5' -63 NC_002512.2 + 93677 0.66 0.778789
Target:  5'- cCCCGCGCaccaggccgCCGGcGUCGACGcgauccCGGcGAc -3'
miRNA:   3'- -GGGCGCGa--------GGCC-CAGCUGCu-----GCCcCU- -5'
9351 5' -63 NC_002512.2 + 93722 0.74 0.326649
Target:  5'- gCCGCGCggCGGaUCGACgggGACGGGGAc -3'
miRNA:   3'- gGGCGCGagGCCcAGCUG---CUGCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.