miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9352 5' -57.9 NC_002512.2 + 144814 0.66 0.908122
Target:  5'- aCGCCuacgGGGGCCacgAGGGcacGGCGCUGc -3'
miRNA:   3'- aGCGGu---UCUCGG---UCCCagaCUGCGAC- -5'
9352 5' -57.9 NC_002512.2 + 157067 0.66 0.902108
Target:  5'- gCGuCCcGGGGuCCGGGGUCgccGGCGCc- -3'
miRNA:   3'- aGC-GGuUCUC-GGUCCCAGa--CUGCGac -5'
9352 5' -57.9 NC_002512.2 + 135132 0.66 0.902108
Target:  5'- aCGCUccGAGGGCCGGGccgCccuggUGAUGCUGg -3'
miRNA:   3'- aGCGG--UUCUCGGUCCca-G-----ACUGCGAC- -5'
9352 5' -57.9 NC_002512.2 + 33179 0.66 0.895876
Target:  5'- -gGUCAAGAGCCGgucGGG-CUGGCGg-- -3'
miRNA:   3'- agCGGUUCUCGGU---CCCaGACUGCgac -5'
9352 5' -57.9 NC_002512.2 + 176666 0.66 0.889429
Target:  5'- cCGCCAGcGcGCCuccuGGGaCUGGCGCg- -3'
miRNA:   3'- aGCGGUU-CuCGGu---CCCaGACUGCGac -5'
9352 5' -57.9 NC_002512.2 + 111295 0.66 0.882769
Target:  5'- -gGCC-AGAcGcCCGGGGUCUGGgaccaGCUGa -3'
miRNA:   3'- agCGGuUCU-C-GGUCCCAGACUg----CGAC- -5'
9352 5' -57.9 NC_002512.2 + 193532 0.66 0.882769
Target:  5'- cUCGUUcugacGGAGUCcgcGGGGUCgGGCGCUGu -3'
miRNA:   3'- -AGCGGu----UCUCGG---UCCCAGaCUGCGAC- -5'
9352 5' -57.9 NC_002512.2 + 202925 0.66 0.882769
Target:  5'- gUCGUCAcGAacGUCAGGGUCUGGCu--- -3'
miRNA:   3'- -AGCGGUuCU--CGGUCCCAGACUGcgac -5'
9352 5' -57.9 NC_002512.2 + 198878 0.67 0.875902
Target:  5'- gUUGCCcAGGGCCAGGGagaacaUGAUGUc- -3'
miRNA:   3'- -AGCGGuUCUCGGUCCCag----ACUGCGac -5'
9352 5' -57.9 NC_002512.2 + 117417 0.67 0.875902
Target:  5'- aCGCU-GGAGUCGGuG-CUGACGCUGg -3'
miRNA:   3'- aGCGGuUCUCGGUCcCaGACUGCGAC- -5'
9352 5' -57.9 NC_002512.2 + 108438 0.67 0.868831
Target:  5'- -gGCCGGGGGCCGGGGgguccCUccccgggcGGCGCc- -3'
miRNA:   3'- agCGGUUCUCGGUCCCa----GA--------CUGCGac -5'
9352 5' -57.9 NC_002512.2 + 204366 0.67 0.86156
Target:  5'- aCGCCAuGAGCaAGGG-CUGGCGg-- -3'
miRNA:   3'- aGCGGUuCUCGgUCCCaGACUGCgac -5'
9352 5' -57.9 NC_002512.2 + 229541 0.67 0.854096
Target:  5'- aCGCCgGGGAGCCGGGcGg--GGCGCc- -3'
miRNA:   3'- aGCGG-UUCUCGGUCC-CagaCUGCGac -5'
9352 5' -57.9 NC_002512.2 + 138 0.67 0.854096
Target:  5'- aCGCCgGGGAGCCGGGcGg--GGCGCc- -3'
miRNA:   3'- aGCGG-UUCUCGGUCC-CagaCUGCGac -5'
9352 5' -57.9 NC_002512.2 + 225411 0.68 0.830599
Target:  5'- gCGCCGGG-GUCGGGGUCggguuggggccGACGCc- -3'
miRNA:   3'- aGCGGUUCuCGGUCCCAGa----------CUGCGac -5'
9352 5' -57.9 NC_002512.2 + 101453 0.68 0.830599
Target:  5'- aCGCCGAGAGCgGGGGg--GugGaCa- -3'
miRNA:   3'- aGCGGUUCUCGgUCCCagaCugC-Gac -5'
9352 5' -57.9 NC_002512.2 + 168051 0.68 0.814079
Target:  5'- cUCGCuCGGGAGUCGGGGUUgggGAUGa-- -3'
miRNA:   3'- -AGCG-GUUCUCGGUCCCAGa--CUGCgac -5'
9352 5' -57.9 NC_002512.2 + 100547 0.68 0.805584
Target:  5'- cUGCCcAGGGCgCAGaGGUCcgUGACGCa- -3'
miRNA:   3'- aGCGGuUCUCG-GUC-CCAG--ACUGCGac -5'
9352 5' -57.9 NC_002512.2 + 178222 0.69 0.779245
Target:  5'- gCGCCAcaGGuCCAGGGUCUccggggacGGCGCg- -3'
miRNA:   3'- aGCGGUucUC-GGUCCCAGA--------CUGCGac -5'
9352 5' -57.9 NC_002512.2 + 215122 0.69 0.761056
Target:  5'- cCGCCAGaacGGCCGGGGUCc-GCGCg- -3'
miRNA:   3'- aGCGGUUc--UCGGUCCCAGacUGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.