miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9354 3' -46.5 NC_002512.2 + 121371 0.83 0.715471
Target:  5'- gGAGAGGGccGGAGAGGagGGCGACGGCc -3'
miRNA:   3'- -CUCUUUCa-UCUUUCUagCUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 123037 0.81 0.812769
Target:  5'- gGAGGAGG-AGGAGGAggaGGCGAUGGCg -3'
miRNA:   3'- -CUCUUUCaUCUUUCUag-CUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 95093 0.81 0.821696
Target:  5'- --uGAAGUAGAccucGAGcUCGGCGACGGCg -3'
miRNA:   3'- cucUUUCAUCU----UUCuAGCUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 191263 0.8 0.855478
Target:  5'- aGAGAGGGcGGGGAGG-CGGCGACGGg -3'
miRNA:   3'- -CUCUUUCaUCUUUCUaGCUGCUGCCg -5'
9354 3' -46.5 NC_002512.2 + 121989 0.8 0.87858
Target:  5'- cGGGAcGAG-AGGAAGAUCG-CGGCGGCc -3'
miRNA:   3'- -CUCU-UUCaUCUUUCUAGCuGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 128801 0.79 0.891439
Target:  5'- cGGGGucuucagcGAGAGGUCGGCGGCGGCg -3'
miRNA:   3'- -CUCUuucau---CUUUCUAGCUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 226376 0.78 0.912345
Target:  5'- cGGGcucGGGUGGAGGGc-CGACGACGGCg -3'
miRNA:   3'- -CUCu--UUCAUCUUUCuaGCUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 102513 0.77 0.939827
Target:  5'- cGGGGAGGacgAGGAGGAggccagGGCGACGGCg -3'
miRNA:   3'- -CUCUUUCa--UCUUUCUag----CUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 149345 0.77 0.944561
Target:  5'- gGAGGAGG-AGGAAGAg-GACGACGGg -3'
miRNA:   3'- -CUCUUUCaUCUUUCUagCUGCUGCCg -5'
9354 3' -46.5 NC_002512.2 + 228928 0.76 0.957273
Target:  5'- gGAGAGAGaAGGAGGAagGGCGA-GGCg -3'
miRNA:   3'- -CUCUUUCaUCUUUCUagCUGCUgCCG- -5'
9354 3' -46.5 NC_002512.2 + 131400 0.76 0.964544
Target:  5'- gGAGGAGGccgGGGAAGAgcugCGACacgguGACGGCg -3'
miRNA:   3'- -CUCUUUCa--UCUUUCUa---GCUG-----CUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 228759 0.76 0.967834
Target:  5'- aGGGAGGgcGGAGGAggCGACcgaGACGGCg -3'
miRNA:   3'- cUCUUUCauCUUUCUa-GCUG---CUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 201686 0.76 0.967834
Target:  5'- cGAGGGcggccgcgucuGGU-GcgGGAUCGGCGGCGGCg -3'
miRNA:   3'- -CUCUU-----------UCAuCuuUCUAGCUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 99989 0.75 0.973752
Target:  5'- cGGGAGAGcGGAuc-GUCGGCGAgGGCg -3'
miRNA:   3'- -CUCUUUCaUCUuucUAGCUGCUgCCG- -5'
9354 3' -46.5 NC_002512.2 + 104621 0.75 0.976395
Target:  5'- gGGGAGGGgacgggGGAGAGGggGAgGGCGGCg -3'
miRNA:   3'- -CUCUUUCa-----UCUUUCUagCUgCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 132404 0.75 0.978838
Target:  5'- -cGAAcGUgauGGggGGAUCGACcGCGGCg -3'
miRNA:   3'- cuCUUuCA---UCuuUCUAGCUGcUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 90436 0.75 0.978838
Target:  5'- gGAGAAGGgcAGGAAGggCGGCGGCcgGGCc -3'
miRNA:   3'- -CUCUUUCa-UCUUUCuaGCUGCUG--CCG- -5'
9354 3' -46.5 NC_002512.2 + 89975 0.75 0.981088
Target:  5'- uAGAAguAGUAGAagAAGA-CGACGACGuGCa -3'
miRNA:   3'- cUCUU--UCAUCU--UUCUaGCUGCUGC-CG- -5'
9354 3' -46.5 NC_002512.2 + 4642 0.75 0.981088
Target:  5'- uGGAcGGUGGuGGGGAUCGcgcuaACGGCGGCg -3'
miRNA:   3'- cUCUuUCAUC-UUUCUAGC-----UGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 209344 0.75 0.983154
Target:  5'- uGGAGGuGUGGuacGAGGUCGGCGACcuGGCg -3'
miRNA:   3'- cUCUUU-CAUCu--UUCUAGCUGCUG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.