miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9354 3' -46.5 NC_002512.2 + 81 0.7 0.999579
Target:  5'- gGGGGAGGUGGAugucaagaaagggcGGGUgGGCGgagGCGGCg -3'
miRNA:   3'- -CUCUUUCAUCUu-------------UCUAgCUGC---UGCCG- -5'
9354 3' -46.5 NC_002512.2 + 256 0.7 0.999633
Target:  5'- aGAGAGAGcgggaaaaggGGAGAGAgagCGgcGCGACGGg -3'
miRNA:   3'- -CUCUUUCa---------UCUUUCUa--GC--UGCUGCCg -5'
9354 3' -46.5 NC_002512.2 + 4642 0.75 0.981088
Target:  5'- uGGAcGGUGGuGGGGAUCGcgcuaACGGCGGCg -3'
miRNA:   3'- cUCUuUCAUC-UUUCUAGC-----UGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 8882 0.67 0.999981
Target:  5'- aAGAcGAGgcucGGguAGAUCGAgGACGGUc -3'
miRNA:   3'- cUCU-UUCa---UCuuUCUAGCUgCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 10889 0.67 0.99999
Target:  5'- aGGAGAGc-GAGAGAUCuGACagagaACGGCg -3'
miRNA:   3'- cUCUUUCauCUUUCUAG-CUGc----UGCCG- -5'
9354 3' -46.5 NC_002512.2 + 39557 0.7 0.999294
Target:  5'- cGGGAcGGUGccAAGggCGGCGACGGg -3'
miRNA:   3'- -CUCUuUCAUcuUUCuaGCUGCUGCCg -5'
9354 3' -46.5 NC_002512.2 + 41114 0.67 0.999986
Target:  5'- cGAGAucu--GAGAGGUUGGCuucGAUGGCa -3'
miRNA:   3'- -CUCUuucauCUUUCUAGCUG---CUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 77003 0.68 0.999952
Target:  5'- -cGAAGG-AGGGAGggUGAacgGACGGCg -3'
miRNA:   3'- cuCUUUCaUCUUUCuaGCUg--CUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 77959 0.67 0.999993
Target:  5'- cGAGccGGGUucgucucGGGGAcCGACGACGGCa -3'
miRNA:   3'- -CUCu-UUCAuc-----UUUCUaGCUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 79947 0.71 0.998447
Target:  5'- cGGAGAGgaaGGAAAGcgCGGCGAUGacGCg -3'
miRNA:   3'- cUCUUUCa--UCUUUCuaGCUGCUGC--CG- -5'
9354 3' -46.5 NC_002512.2 + 81825 0.67 0.999974
Target:  5'- cGAGGucuccGAGAGGaCGACGACGaGCg -3'
miRNA:   3'- -CUCUuucauCUUUCUaGCUGCUGC-CG- -5'
9354 3' -46.5 NC_002512.2 + 82241 0.67 0.999993
Target:  5'- cGAGGAGGgaugcgaagaggcgGGGAGGAUCGcacgccaGCGACaGGUc -3'
miRNA:   3'- -CUCUUUCa-------------UCUUUCUAGC-------UGCUG-CCG- -5'
9354 3' -46.5 NC_002512.2 + 89975 0.75 0.981088
Target:  5'- uAGAAguAGUAGAagAAGA-CGACGACGuGCa -3'
miRNA:   3'- cUCUU--UCAUCU--UUCUaGCUGCUGC-CG- -5'
9354 3' -46.5 NC_002512.2 + 90436 0.75 0.978838
Target:  5'- gGAGAAGGgcAGGAAGggCGGCGGCcgGGCc -3'
miRNA:   3'- -CUCUUUCa-UCUUUCuaGCUGCUG--CCG- -5'
9354 3' -46.5 NC_002512.2 + 90543 0.7 0.999294
Target:  5'- uGGGGGAGgAGGAgcGGGagGACGAgGGCg -3'
miRNA:   3'- -CUCUUUCaUCUU--UCUagCUGCUgCCG- -5'
9354 3' -46.5 NC_002512.2 + 91303 0.7 0.999633
Target:  5'- aAGGAGGUgucggcggcgcAGAGGGAgcUC-ACGGCGGCg -3'
miRNA:   3'- cUCUUUCA-----------UCUUUCU--AGcUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 93767 0.72 0.997772
Target:  5'- gGAGGGAGggAGGGAGGUCGGgagcggaucgggUGACGGg -3'
miRNA:   3'- -CUCUUUCa-UCUUUCUAGCU------------GCUGCCg -5'
9354 3' -46.5 NC_002512.2 + 94059 0.73 0.9936
Target:  5'- cGGGAAGGgcGcgGGAcccuccuccccccgCGACGGCGGCg -3'
miRNA:   3'- -CUCUUUCauCuuUCUa-------------GCUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 95093 0.81 0.821696
Target:  5'- --uGAAGUAGAccucGAGcUCGGCGACGGCg -3'
miRNA:   3'- cucUUUCAUCU----UUCuAGCUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 95825 0.72 0.99631
Target:  5'- gGGGAAGGUGGcgacggcccgcaGGAGGcCGGgGGCGGCg -3'
miRNA:   3'- -CUCUUUCAUC------------UUUCUaGCUgCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.