miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9355 3' -51.8 NC_002512.2 + 117409 0.77 0.688462
Target:  5'- gCGCGCACACGcuggaGUCG-GUgCUGACGCu -3'
miRNA:   3'- -GUGCGUGUGUug---CAGCaCA-GACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 228113 0.74 0.852889
Target:  5'- gGCGUcggcCGCAACGUCGUG-CUGgGCGCc -3'
miRNA:   3'- gUGCGu---GUGUUGCAGCACaGAC-UGCG- -5'
9355 3' -51.8 NC_002512.2 + 189624 0.73 0.889213
Target:  5'- -cCGCACGCGAuCGUCGcgGUCggcuucgucggGACGCg -3'
miRNA:   3'- guGCGUGUGUU-GCAGCa-CAGa----------CUGCG- -5'
9355 3' -51.8 NC_002512.2 + 221750 0.73 0.889213
Target:  5'- gACGCGCcgucgaacgGCAGCugggcggccGUCGUGUCcUGGCGCc -3'
miRNA:   3'- gUGCGUG---------UGUUG---------CAGCACAG-ACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 122092 0.72 0.902216
Target:  5'- aCGCGCcggACGCGAgGUCGgcgCUGACGUc -3'
miRNA:   3'- -GUGCG---UGUGUUgCAGCacaGACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 94795 0.71 0.944943
Target:  5'- gGCGCGCACGACG-CGga---GACGCg -3'
miRNA:   3'- gUGCGUGUGUUGCaGCacagaCUGCG- -5'
9355 3' -51.8 NC_002512.2 + 168197 0.7 0.960749
Target:  5'- aCACGCACGCcuCGUCuccggGUGUUUGuacggcuCGCg -3'
miRNA:   3'- -GUGCGUGUGuuGCAG-----CACAGACu------GCG- -5'
9355 3' -51.8 NC_002512.2 + 134512 0.7 0.964149
Target:  5'- cCACGCcgACGuCGACGUCGgcgucccgCUGugGCg -3'
miRNA:   3'- -GUGCG--UGU-GUUGCAGCaca-----GACugCG- -5'
9355 3' -51.8 NC_002512.2 + 142173 0.7 0.965449
Target:  5'- uCACGaCACACGGCgGgagaaggauccggggUCGUGUC-GGCGCg -3'
miRNA:   3'- -GUGC-GUGUGUUG-C---------------AGCACAGaCUGCG- -5'
9355 3' -51.8 NC_002512.2 + 183961 0.7 0.967337
Target:  5'- gACGCGCGCucggGCGUCGUcgccuGUCggGGCGg -3'
miRNA:   3'- gUGCGUGUGu---UGCAGCA-----CAGa-CUGCg -5'
9355 3' -51.8 NC_002512.2 + 130283 0.7 0.967337
Target:  5'- uCACGUACACGACGgucaUGUGgaagaUGAUGUg -3'
miRNA:   3'- -GUGCGUGUGUUGCa---GCACag---ACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 131217 0.7 0.970319
Target:  5'- cCAgGCGCuCGACGUCGcgGUCgGAgGCc -3'
miRNA:   3'- -GUgCGUGuGUUGCAGCa-CAGaCUgCG- -5'
9355 3' -51.8 NC_002512.2 + 126354 0.69 0.973101
Target:  5'- gGCGCGCACGACG-CGUucacgguccUCUGGcCGCc -3'
miRNA:   3'- gUGCGUGUGUUGCaGCAc--------AGACU-GCG- -5'
9355 3' -51.8 NC_002512.2 + 171156 0.69 0.973101
Target:  5'- --aGCGCGCGACGcCGU-UCcGACGCu -3'
miRNA:   3'- gugCGUGUGUUGCaGCAcAGaCUGCG- -5'
9355 3' -51.8 NC_002512.2 + 193935 0.69 0.97569
Target:  5'- -cCGCugACGGcCGgggaaCGUcGUCUGGCGCg -3'
miRNA:   3'- guGCGugUGUU-GCa----GCA-CAGACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 170470 0.69 0.980312
Target:  5'- gGCGCACagguuGCAGCG-CGUGUCgaucuccaGCGCc -3'
miRNA:   3'- gUGCGUG-----UGUUGCaGCACAGac------UGCG- -5'
9355 3' -51.8 NC_002512.2 + 80725 0.69 0.981764
Target:  5'- -gUGCAUgucaaaacucgacuGCGACGUCGcgGUUUGACGUc -3'
miRNA:   3'- guGCGUG--------------UGUUGCAGCa-CAGACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 121822 0.68 0.984246
Target:  5'- gCACGCACGgGGCGg-GUGacCUGACGa -3'
miRNA:   3'- -GUGCGUGUgUUGCagCACa-GACUGCg -5'
9355 3' -51.8 NC_002512.2 + 119178 0.68 0.985973
Target:  5'- aACG-ACACGACGcUCGUGgacCUG-CGCa -3'
miRNA:   3'- gUGCgUGUGUUGC-AGCACa--GACuGCG- -5'
9355 3' -51.8 NC_002512.2 + 124203 0.68 0.987094
Target:  5'- gCACGCACAucacCAcCGUCGUGUuccaggucccggggCUGAgGUa -3'
miRNA:   3'- -GUGCGUGU----GUuGCAGCACA--------------GACUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.