miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9355 3' -51.8 NC_002512.2 + 9770 0.67 0.993495
Target:  5'- uGCGCGCAC-GCGUgaCGUGUUaaaaaaaGAUGCg -3'
miRNA:   3'- gUGCGUGUGuUGCA--GCACAGa------CUGCG- -5'
9355 3' -51.8 NC_002512.2 + 80725 0.69 0.981764
Target:  5'- -gUGCAUgucaaaacucgacuGCGACGUCGcgGUUUGACGUc -3'
miRNA:   3'- guGCGUG--------------UGUUGCAGCa-CAGACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 80778 0.68 0.990295
Target:  5'- aGCGUcagACACGACGUUGUGU---GCGUg -3'
miRNA:   3'- gUGCG---UGUGUUGCAGCACAgacUGCG- -5'
9355 3' -51.8 NC_002512.2 + 90933 0.66 0.998125
Target:  5'- gACGgGCGCGAcCGgggCGUG-CgugGGCGCg -3'
miRNA:   3'- gUGCgUGUGUU-GCa--GCACaGa--CUGCG- -5'
9355 3' -51.8 NC_002512.2 + 94795 0.71 0.944943
Target:  5'- gGCGCGCACGACG-CGga---GACGCg -3'
miRNA:   3'- gUGCGUGUGUUGCaGCacagaCUGCG- -5'
9355 3' -51.8 NC_002512.2 + 117409 0.77 0.688462
Target:  5'- gCGCGCACACGcuggaGUCG-GUgCUGACGCu -3'
miRNA:   3'- -GUGCGUGUGUug---CAGCaCA-GACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 119178 0.68 0.985973
Target:  5'- aACG-ACACGACGcUCGUGgacCUG-CGCa -3'
miRNA:   3'- gUGCgUGUGUUGC-AGCACa--GACuGCG- -5'
9355 3' -51.8 NC_002512.2 + 119948 0.66 0.996386
Target:  5'- -cCGCACGCggUGgacuUCGUGgcgCUGGgGCc -3'
miRNA:   3'- guGCGUGUGuuGC----AGCACa--GACUgCG- -5'
9355 3' -51.8 NC_002512.2 + 120792 0.66 0.997373
Target:  5'- gGCGCugACGGCcacgGUGUCgacggaccUGGCGCg -3'
miRNA:   3'- gUGCGugUGUUGcag-CACAG--------ACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 121822 0.68 0.984246
Target:  5'- gCACGCACGgGGCGg-GUGacCUGACGa -3'
miRNA:   3'- -GUGCGUGUgUUGCagCACa-GACUGCg -5'
9355 3' -51.8 NC_002512.2 + 122092 0.72 0.902216
Target:  5'- aCGCGCcggACGCGAgGUCGgcgCUGACGUc -3'
miRNA:   3'- -GUGCG---UGUGUUgCAGCacaGACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 124203 0.68 0.987094
Target:  5'- gCACGCACAucacCAcCGUCGUGUuccaggucccggggCUGAgGUa -3'
miRNA:   3'- -GUGCGUGU----GUuGCAGCACA--------------GACUgCG- -5'
9355 3' -51.8 NC_002512.2 + 124702 0.66 0.998125
Target:  5'- gGCGCACGC--CGUCcUGg--GGCGCg -3'
miRNA:   3'- gUGCGUGUGuuGCAGcACagaCUGCG- -5'
9355 3' -51.8 NC_002512.2 + 126354 0.69 0.973101
Target:  5'- gGCGCGCACGACG-CGUucacgguccUCUGGcCGCc -3'
miRNA:   3'- gUGCGUGUGUUGCaGCAc--------AGACU-GCG- -5'
9355 3' -51.8 NC_002512.2 + 129525 0.66 0.995788
Target:  5'- cCGCGUACaggACGACGcCGUG-CUG-CGUg -3'
miRNA:   3'- -GUGCGUG---UGUUGCaGCACaGACuGCG- -5'
9355 3' -51.8 NC_002512.2 + 130283 0.7 0.967337
Target:  5'- uCACGUACACGACGgucaUGUGgaagaUGAUGUg -3'
miRNA:   3'- -GUGCGUGUGUUGCa---GCACag---ACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 131217 0.7 0.970319
Target:  5'- cCAgGCGCuCGACGUCGcgGUCgGAgGCc -3'
miRNA:   3'- -GUgCGUGuGUUGCAGCa-CAGaCUgCG- -5'
9355 3' -51.8 NC_002512.2 + 132742 0.67 0.992539
Target:  5'- gGCGCAgCGCGGCGUCGUcccgCaGGCGg -3'
miRNA:   3'- gUGCGU-GUGUUGCAGCAca--GaCUGCg -5'
9355 3' -51.8 NC_002512.2 + 134512 0.7 0.964149
Target:  5'- cCACGCcgACGuCGACGUCGgcgucccgCUGugGCg -3'
miRNA:   3'- -GUGCG--UGU-GUUGCAGCaca-----GACugCG- -5'
9355 3' -51.8 NC_002512.2 + 135006 0.67 0.992438
Target:  5'- gACGUggaccgacauccuACACGACGccaggaUCGggggcccGUCUGACGCg -3'
miRNA:   3'- gUGCG-------------UGUGUUGC------AGCa------CAGACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.