miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9355 5' -53.6 NC_002512.2 + 80728 0.79 0.46535
Target:  5'- -cAUGUCAaaacucGACUGCGACGUCGCGGUUu -3'
miRNA:   3'- ucUGCAGU------UUGGCGCUGCAGCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 221428 0.76 0.661162
Target:  5'- cGACGgccgccaugCGGACCGCGGcCGgggCGCGGUCg -3'
miRNA:   3'- uCUGCa--------GUUUGGCGCU-GCa--GCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 189605 0.75 0.66818
Target:  5'- cGACGUUcGugCGCGGCGgccgcacgcgaucgUCGCGGUCg -3'
miRNA:   3'- uCUGCAGuUugGCGCUGC--------------AGCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 102292 0.75 0.671183
Target:  5'- -cGCGUCGAccGCCaggGCGACGUCGCGGa- -3'
miRNA:   3'- ucUGCAGUU--UGG---CGCUGCAGCGUCag -5'
9355 5' -53.6 NC_002512.2 + 213750 0.75 0.701026
Target:  5'- cGGGCG-CAGGCCGCccggcaGAUGaUCGCGGUCa -3'
miRNA:   3'- -UCUGCaGUUUGGCG------CUGC-AGCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 154796 0.74 0.750476
Target:  5'- cGACGUCGAGCCcccgaaacggcgccuCGACGUCGCcgcccGGUCu -3'
miRNA:   3'- uCUGCAGUUUGGc--------------GCUGCAGCG-----UCAG- -5'
9355 5' -53.6 NC_002512.2 + 225713 0.74 0.758963
Target:  5'- aGGAUGUgucgcccgCGAGCCGCGGCGacUCGCucAGUCg -3'
miRNA:   3'- -UCUGCA--------GUUUGGCGCUGC--AGCG--UCAG- -5'
9355 5' -53.6 NC_002512.2 + 109831 0.74 0.758963
Target:  5'- -cACGUCGAACCGCcgGGCGUCGgGGa- -3'
miRNA:   3'- ucUGCAGUUUGGCG--CUGCAGCgUCag -5'
9355 5' -53.6 NC_002512.2 + 150392 0.74 0.768291
Target:  5'- gAGGCGUCcccccuccccGAACCGCccacgGGCG-CGCGGUCg -3'
miRNA:   3'- -UCUGCAG----------UUUGGCG-----CUGCaGCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 186294 0.73 0.777501
Target:  5'- -cGCGUCcucguCCGCGACGcCGUGGUCa -3'
miRNA:   3'- ucUGCAGuuu--GGCGCUGCaGCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 100847 0.73 0.804342
Target:  5'- uGACGUCAaaGugCGCGACGcCGCAc-- -3'
miRNA:   3'- uCUGCAGU--UugGCGCUGCaGCGUcag -5'
9355 5' -53.6 NC_002512.2 + 144518 0.73 0.812999
Target:  5'- cGGAC-UCGGuCCGCGugGgCGCGGUCc -3'
miRNA:   3'- -UCUGcAGUUuGGCGCugCaGCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 99601 0.72 0.837985
Target:  5'- cGGcACGUCccgggccCCGCGcuCGUCGCGGUCg -3'
miRNA:   3'- -UC-UGCAGuuu----GGCGCu-GCAGCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 140384 0.72 0.841198
Target:  5'- cGACGUCu--CCGCGcgguacacaaacgucACGuUCGCGGUCu -3'
miRNA:   3'- uCUGCAGuuuGGCGC---------------UGC-AGCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 154736 0.72 0.845172
Target:  5'- -uGCGUCcgcGGCCGCGuccgacgGCGUCGCGGUg -3'
miRNA:   3'- ucUGCAGu--UUGGCGC-------UGCAGCGUCAg -5'
9355 5' -53.6 NC_002512.2 + 165954 0.72 0.850657
Target:  5'- aGGACGccggccgcuucacCAAGCUGCGGCGggGCGGUCg -3'
miRNA:   3'- -UCUGCa------------GUUUGGCGCUGCagCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 35870 0.72 0.85375
Target:  5'- cGACGUCGAAUCGacCGugGUaCGCucGGUCg -3'
miRNA:   3'- uCUGCAGUUUGGC--GCugCA-GCG--UCAG- -5'
9355 5' -53.6 NC_002512.2 + 201211 0.72 0.856812
Target:  5'- --uCGUCGcgcagguaguuggccAACCGCG-UGUCGCGGUCg -3'
miRNA:   3'- ucuGCAGU---------------UUGGCGCuGCAGCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 167167 0.71 0.868739
Target:  5'- gAGGcCGUC-GACCGCGACG-CGCugcgcGUCa -3'
miRNA:   3'- -UCU-GCAGuUUGGCGCUGCaGCGu----CAG- -5'
9355 5' -53.6 NC_002512.2 + 189222 0.71 0.868739
Target:  5'- cGACGUCGGAuCCGUc-CGUCGCcGUCg -3'
miRNA:   3'- uCUGCAGUUU-GGCGcuGCAGCGuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.