miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9355 5' -53.6 NC_002512.2 + 35870 0.72 0.85375
Target:  5'- cGACGUCGAAUCGacCGugGUaCGCucGGUCg -3'
miRNA:   3'- uCUGCAGUUUGGC--GCugCA-GCG--UCAG- -5'
9355 5' -53.6 NC_002512.2 + 40301 0.69 0.940377
Target:  5'- cGACcUCAGAgccuacaucugUUGCGACGUCGCcGUCg -3'
miRNA:   3'- uCUGcAGUUU-----------GGCGCUGCAGCGuCAG- -5'
9355 5' -53.6 NC_002512.2 + 43466 0.68 0.963947
Target:  5'- cGGCGUUucuGCuCGCGGCGUCacaGGUCu -3'
miRNA:   3'- uCUGCAGuu-UG-GCGCUGCAGcg-UCAG- -5'
9355 5' -53.6 NC_002512.2 + 73341 0.66 0.987329
Target:  5'- cAGcCGUCAcgcgcuCCGaacCGGCGUCGCAGg- -3'
miRNA:   3'- -UCuGCAGUuu----GGC---GCUGCAGCGUCag -5'
9355 5' -53.6 NC_002512.2 + 73894 0.67 0.972867
Target:  5'- cAGAUGUUAucgGACCGCG-CGguccaagCGCuGUCg -3'
miRNA:   3'- -UCUGCAGU---UUGGCGCuGCa------GCGuCAG- -5'
9355 5' -53.6 NC_002512.2 + 74637 0.7 0.908629
Target:  5'- gAGcCGUCGAcGCCGCGACGg-GCGGg- -3'
miRNA:   3'- -UCuGCAGUU-UGGCGCUGCagCGUCag -5'
9355 5' -53.6 NC_002512.2 + 77501 0.68 0.967122
Target:  5'- -cGCGUCGAACaauGCGACGgggCGacCGGUCg -3'
miRNA:   3'- ucUGCAGUUUGg--CGCUGCa--GC--GUCAG- -5'
9355 5' -53.6 NC_002512.2 + 78328 0.66 0.99128
Target:  5'- cGAcCGUcCGGACCGCGGaagguUCGuCAGUCg -3'
miRNA:   3'- uCU-GCA-GUUUGGCGCUgc---AGC-GUCAG- -5'
9355 5' -53.6 NC_002512.2 + 80728 0.79 0.46535
Target:  5'- -cAUGUCAaaacucGACUGCGACGUCGCGGUUu -3'
miRNA:   3'- ucUGCAGU------UUGGCGCUGCAGCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 87681 0.7 0.920135
Target:  5'- cGACGUCGagaccgacggGACgCGCGGCGaCGCGGa- -3'
miRNA:   3'- uCUGCAGU----------UUG-GCGCUGCaGCGUCag -5'
9355 5' -53.6 NC_002512.2 + 87839 0.69 0.940377
Target:  5'- cGGGCGUCGGGCCcucGCGGCGggUCGCcGg- -3'
miRNA:   3'- -UCUGCAGUUUGG---CGCUGC--AGCGuCag -5'
9355 5' -53.6 NC_002512.2 + 88444 0.71 0.896212
Target:  5'- cAGGCGUCccGGACCaGCaGGCGggGCAGUCc -3'
miRNA:   3'- -UCUGCAG--UUUGG-CG-CUGCagCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 88963 0.66 0.99128
Target:  5'- cGcCGUCccGAGCCGCcGCGUCGUccccGUCg -3'
miRNA:   3'- uCuGCAG--UUUGGCGcUGCAGCGu---CAG- -5'
9355 5' -53.6 NC_002512.2 + 89828 0.67 0.979203
Target:  5'- aGGACGUCgAGACCGCGcugcACGgcccgguucugcgUGCGGUg -3'
miRNA:   3'- -UCUGCAG-UUUGGCGC----UGCa------------GCGUCAg -5'
9355 5' -53.6 NC_002512.2 + 90632 0.69 0.940377
Target:  5'- cGGGCGgcgCGAcccggcGCCGCGGC--CGCGGUCu -3'
miRNA:   3'- -UCUGCa--GUU------UGGCGCUGcaGCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 92563 0.68 0.960565
Target:  5'- cGACGUCgGAGgCGcCGACGcCGCGGcCg -3'
miRNA:   3'- uCUGCAG-UUUgGC-GCUGCaGCGUCaG- -5'
9355 5' -53.6 NC_002512.2 + 95027 0.66 0.988775
Target:  5'- cGGCGUCGc-CCGaGACGUCGCGc-- -3'
miRNA:   3'- uCUGCAGUuuGGCgCUGCAGCGUcag -5'
9355 5' -53.6 NC_002512.2 + 95955 0.66 0.99128
Target:  5'- cGGGcCGUCGGGCCGCcGcCGUacaGCAGg- -3'
miRNA:   3'- -UCU-GCAGUUUGGCG-CuGCAg--CGUCag -5'
9355 5' -53.6 NC_002512.2 + 99434 0.68 0.963947
Target:  5'- aGGACGcUC-AGCCGgGACGUgGCGaagacGUCg -3'
miRNA:   3'- -UCUGC-AGuUUGGCgCUGCAgCGU-----CAG- -5'
9355 5' -53.6 NC_002512.2 + 99601 0.72 0.837985
Target:  5'- cGGcACGUCccgggccCCGCGcuCGUCGCGGUCg -3'
miRNA:   3'- -UC-UGCAGuuu----GGCGCu-GCAGCGUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.