miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9356 3' -55.8 NC_002512.2 + 157101 0.66 0.969189
Target:  5'- cGGgCCCg--UCCCGgcGAcgUCCCUCCc -3'
miRNA:   3'- -CCaGGGagaAGGGCa-CUa-AGGGAGGa -5'
9356 3' -55.8 NC_002512.2 + 966 0.66 0.969189
Target:  5'- uGUCUCUCUUCUCGUcg-UCCuCUCUc -3'
miRNA:   3'- cCAGGGAGAAGGGCAcuaAGG-GAGGa -5'
9356 3' -55.8 NC_002512.2 + 151548 0.66 0.963024
Target:  5'- gGGUCCCg--UCCCGgucucgCCUUCCc -3'
miRNA:   3'- -CCAGGGagaAGGGCacuaa-GGGAGGa -5'
9356 3' -55.8 NC_002512.2 + 187595 0.66 0.963024
Target:  5'- -cUCCCUCUgUCCCGUaaaUCUCUCUg -3'
miRNA:   3'- ccAGGGAGA-AGGGCAcuaAGGGAGGa -5'
9356 3' -55.8 NC_002512.2 + 7032 0.66 0.95964
Target:  5'- cGGUCCUUCUcgguugUCCCa----UCCCUCCc -3'
miRNA:   3'- -CCAGGGAGA------AGGGcacuaAGGGAGGa -5'
9356 3' -55.8 NC_002512.2 + 1716 0.67 0.952246
Target:  5'- uGUCCUUCUUCCCcu--UUCCCUUUc -3'
miRNA:   3'- cCAGGGAGAAGGGcacuAAGGGAGGa -5'
9356 3' -55.8 NC_002512.2 + 128107 0.67 0.929959
Target:  5'- gGGcCuCCUCcUCCCGagGGUUCCCgCCg -3'
miRNA:   3'- -CCaG-GGAGaAGGGCa-CUAAGGGaGGa -5'
9356 3' -55.8 NC_002512.2 + 155219 0.68 0.924835
Target:  5'- cGUCCCUCcgUCCCGUcccccGAgcUCCC-CCg -3'
miRNA:   3'- cCAGGGAGa-AGGGCA-----CUa-AGGGaGGa -5'
9356 3' -55.8 NC_002512.2 + 215876 0.68 0.908122
Target:  5'- -aUCCCUCUcUCCCGUccccucgUCCCUCg- -3'
miRNA:   3'- ccAGGGAGA-AGGGCAcua----AGGGAGga -5'
9356 3' -55.8 NC_002512.2 + 191552 0.68 0.895876
Target:  5'- cGGaUCCCcgCgaUCCGUGuUUCCCUCCc -3'
miRNA:   3'- -CC-AGGGa-GaaGGGCACuAAGGGAGGa -5'
9356 3' -55.8 NC_002512.2 + 75028 0.69 0.875902
Target:  5'- aGUCCUUCUUCCCcacGAUggacgcugccCCCUCCg -3'
miRNA:   3'- cCAGGGAGAAGGGca-CUAa---------GGGAGGa -5'
9356 3' -55.8 NC_002512.2 + 209976 0.7 0.830599
Target:  5'- aGGUCgCCaacggCUUCCCG-GggUUCCUCCg -3'
miRNA:   3'- -CCAG-GGa----GAAGGGCaCuaAGGGAGGa -5'
9356 3' -55.8 NC_002512.2 + 224992 0.74 0.655155
Target:  5'- cGGcgCCCUCUUCCCGUcg--CCgCUCCUc -3'
miRNA:   3'- -CCa-GGGAGAAGGGCAcuaaGG-GAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.