miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9356 5' -45.5 NC_002512.2 + 219826 0.66 0.999999
Target:  5'- cGAcAGGGGGUcGguc--GGGGGGUCCg -3'
miRNA:   3'- -CUuUCUCUCA-CauuuuUUCCCCAGGg -5'
9356 5' -45.5 NC_002512.2 + 168151 0.66 0.999999
Target:  5'- uGggGGuGGGgGgcGGAGAGGGGacgcggCCCc -3'
miRNA:   3'- -CuuUCuCUCaCauUUUUUCCCCa-----GGG- -5'
9356 5' -45.5 NC_002512.2 + 219946 0.66 0.999999
Target:  5'- cGggGGAGGGUGgaucccccGGGUCgCg -3'
miRNA:   3'- -CuuUCUCUCACauuuuuucCCCAGgG- -5'
9356 5' -45.5 NC_002512.2 + 73804 0.67 0.999998
Target:  5'- uGAcGGuuGGUGUcgccAGGGGGUCCUc -3'
miRNA:   3'- -CUuUCucUCACAuuuuUUCCCCAGGG- -5'
9356 5' -45.5 NC_002512.2 + 147251 0.67 0.999998
Target:  5'- aAGAGGGAGg--AGAGAAGuGGGaaaCCCg -3'
miRNA:   3'- cUUUCUCUCacaUUUUUUC-CCCa--GGG- -5'
9356 5' -45.5 NC_002512.2 + 229201 0.67 0.999997
Target:  5'- cGGAGAGGGaaagagcgGAGAGAGGGGUgCg -3'
miRNA:   3'- cUUUCUCUCaca-----UUUUUUCCCCAgGg -5'
9356 5' -45.5 NC_002512.2 + 229067 0.67 0.999993
Target:  5'- aGAGGAGAGgagGAGAGAGGaGaCCCa -3'
miRNA:   3'- cUUUCUCUCacaUUUUUUCCcCaGGG- -5'
9356 5' -45.5 NC_002512.2 + 160946 0.68 0.999991
Target:  5'- -uGGGGGGGUcac-GAGGGGGGaUCCCc -3'
miRNA:   3'- cuUUCUCUCAcauuUUUUCCCC-AGGG- -5'
9356 5' -45.5 NC_002512.2 + 96520 0.68 0.999987
Target:  5'- gGAGGGAGccgcgccggcGGUGUGAGccgggGccGGGGaUCCCg -3'
miRNA:   3'- -CUUUCUC----------UCACAUUU-----UuuCCCC-AGGG- -5'
9356 5' -45.5 NC_002512.2 + 200421 0.68 0.999987
Target:  5'- cGGAGGAGGacGaGGAGAAGGGGUCg- -3'
miRNA:   3'- -CUUUCUCUcaCaUUUUUUCCCCAGgg -5'
9356 5' -45.5 NC_002512.2 + 228658 0.69 0.999955
Target:  5'- aGAAAGAGAGgcggGGAGGAcGGGG-CCg -3'
miRNA:   3'- -CUUUCUCUCaca-UUUUUU-CCCCaGGg -5'
9356 5' -45.5 NC_002512.2 + 227519 0.69 0.999935
Target:  5'- gGggGGAGAGUccggcggcggacggGgggAGGAGGGcGGGUCCg -3'
miRNA:   3'- -CuuUCUCUCA--------------Ca--UUUUUUC-CCCAGGg -5'
9356 5' -45.5 NC_002512.2 + 254 0.69 0.999896
Target:  5'- gGAGAGAGAGcg-GGAAAAGGGGa--- -3'
miRNA:   3'- -CUUUCUCUCacaUUUUUUCCCCaggg -5'
9356 5' -45.5 NC_002512.2 + 229657 0.69 0.999896
Target:  5'- gGAGAGAGAGcg-GGAAAAGGGGa--- -3'
miRNA:   3'- -CUUUCUCUCacaUUUUUUCCCCaggg -5'
9356 5' -45.5 NC_002512.2 + 149447 0.7 0.999865
Target:  5'- gGggGGAGAG------GAAGGGGaCCCg -3'
miRNA:   3'- -CuuUCUCUCacauuuUUUCCCCaGGG- -5'
9356 5' -45.5 NC_002512.2 + 153585 0.7 0.999776
Target:  5'- cGggGGGGGG-GUAGGGGGGGGGg--- -3'
miRNA:   3'- -CuuUCUCUCaCAUUUUUUCCCCaggg -5'
9356 5' -45.5 NC_002512.2 + 151531 0.7 0.999776
Target:  5'- ---cGGGAaaacccGAAAAGGGGUCCCg -3'
miRNA:   3'- cuuuCUCUcacau-UUUUUCCCCAGGG- -5'
9356 5' -45.5 NC_002512.2 + 221598 0.7 0.999776
Target:  5'- cGGAGGGGGGUcgGUGGAcggcgaggagGGAGcGGGUCCa -3'
miRNA:   3'- -CUUUCUCUCA--CAUUU----------UUUC-CCCAGGg -5'
9356 5' -45.5 NC_002512.2 + 127797 0.71 0.999136
Target:  5'- cAGGGAGAcGUGccgGAAGAAcucGGGUCCCg -3'
miRNA:   3'- cUUUCUCU-CACa--UUUUUUc--CCCAGGG- -5'
9356 5' -45.5 NC_002512.2 + 127305 0.72 0.998711
Target:  5'- aGGAGGAGAGgaUGGAGAccAGGGcGUCCUu -3'
miRNA:   3'- -CUUUCUCUCacAUUUUU--UCCC-CAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.