miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9357 5' -59.1 NC_002512.2 + 182453 0.67 0.805264
Target:  5'- -cGCCGUGCgGGCGUgGuGCuCGUGg -3'
miRNA:   3'- gaCGGCGUGgCCGCAgCuCGuGCAUg -5'
9357 5' -59.1 NC_002512.2 + 138648 0.67 0.805264
Target:  5'- --cCCGUACgCGGCGUCccugacGAGCACGguggACu -3'
miRNA:   3'- gacGGCGUG-GCCGCAG------CUCGUGCa---UG- -5'
9357 5' -59.1 NC_002512.2 + 210981 0.68 0.796749
Target:  5'- gUGUCGCGCCuGCGUgGccGCGCaGUACg -3'
miRNA:   3'- gACGGCGUGGcCGCAgCu-CGUG-CAUG- -5'
9357 5' -59.1 NC_002512.2 + 172410 0.68 0.796749
Target:  5'- aUGaCCGC-CCGGC-UgGAGCACGUc- -3'
miRNA:   3'- gAC-GGCGuGGCCGcAgCUCGUGCAug -5'
9357 5' -59.1 NC_002512.2 + 203159 0.68 0.779322
Target:  5'- -aGCgGCGCCGGCGaCGcGCACa--- -3'
miRNA:   3'- gaCGgCGUGGCCGCaGCuCGUGcaug -5'
9357 5' -59.1 NC_002512.2 + 94976 0.68 0.779322
Target:  5'- -cGCCGCGCCGGUccgCGuacagguGCGCGUccgaGCa -3'
miRNA:   3'- gaCGGCGUGGCCGca-GCu------CGUGCA----UG- -5'
9357 5' -59.1 NC_002512.2 + 150077 0.68 0.779322
Target:  5'- -cGCCGcCGCCGcCGUCGGGCgAUGgagACg -3'
miRNA:   3'- gaCGGC-GUGGCcGCAGCUCG-UGCa--UG- -5'
9357 5' -59.1 NC_002512.2 + 199939 0.68 0.779322
Target:  5'- -cGCCGCucACCGGCuGUCcAGCAUGa-- -3'
miRNA:   3'- gaCGGCG--UGGCCG-CAGcUCGUGCaug -5'
9357 5' -59.1 NC_002512.2 + 201925 0.68 0.779322
Target:  5'- -gGCCGCccAUCGGCGaCGGGCccGgGUACg -3'
miRNA:   3'- gaCGGCG--UGGCCGCaGCUCG--UgCAUG- -5'
9357 5' -59.1 NC_002512.2 + 132697 0.68 0.776665
Target:  5'- -cGCCGCagACgGGCGUCGugggcgagauccucGGCcCGUGCc -3'
miRNA:   3'- gaCGGCG--UGgCCGCAGC--------------UCGuGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 221043 0.68 0.770425
Target:  5'- gUGCCGC-CCGGCaG-CGAGCcCGUc- -3'
miRNA:   3'- gACGGCGuGGCCG-CaGCUCGuGCAug -5'
9357 5' -59.1 NC_002512.2 + 225789 0.68 0.770425
Target:  5'- -gGCUGCGCCGGC--CGGGcCGCGgGCg -3'
miRNA:   3'- gaCGGCGUGGCCGcaGCUC-GUGCaUG- -5'
9357 5' -59.1 NC_002512.2 + 121406 0.68 0.761416
Target:  5'- -aGCCGCGCCuGGCGUgGAGgGag-ACg -3'
miRNA:   3'- gaCGGCGUGG-CCGCAgCUCgUgcaUG- -5'
9357 5' -59.1 NC_002512.2 + 122123 0.68 0.752303
Target:  5'- -gGCCGCGCUGGacagCGuGgACGUGCg -3'
miRNA:   3'- gaCGGCGUGGCCgca-GCuCgUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 174227 0.68 0.752303
Target:  5'- --cCCGC-CCGGCGUCGAGU-CGUc- -3'
miRNA:   3'- gacGGCGuGGCCGCAGCUCGuGCAug -5'
9357 5' -59.1 NC_002512.2 + 212082 0.69 0.743094
Target:  5'- -cGCCGC-CUGuaCGaCGAGCGCGUGCu -3'
miRNA:   3'- gaCGGCGuGGCc-GCaGCUCGUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 217318 0.69 0.733797
Target:  5'- -gGCUcCGCCaGCGUCuGcAGCACGUACg -3'
miRNA:   3'- gaCGGcGUGGcCGCAG-C-UCGUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 211365 0.69 0.733797
Target:  5'- cCUGaCCGC-CCGGCG-CG-GCAUGcUGCg -3'
miRNA:   3'- -GAC-GGCGuGGCCGCaGCuCGUGC-AUG- -5'
9357 5' -59.1 NC_002512.2 + 128026 0.69 0.71497
Target:  5'- --cCCGCcCCGGCGUCGAagagcuGCACGg-- -3'
miRNA:   3'- gacGGCGuGGCCGCAGCU------CGUGCaug -5'
9357 5' -59.1 NC_002512.2 + 126338 0.69 0.705457
Target:  5'- -cGCCGCGuCCGG-GaCGGGCGCGcACg -3'
miRNA:   3'- gaCGGCGU-GGCCgCaGCUCGUGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.