miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9357 5' -59.1 NC_002512.2 + 113063 0.72 0.569752
Target:  5'- -aGCCGCACgagggccaGGCgGUCGAcgaugcGCACGUACu -3'
miRNA:   3'- gaCGGCGUGg-------CCG-CAGCU------CGUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 114183 0.77 0.303114
Target:  5'- -gGUgGCGCCGGCGUCGGGCcCGgcgGCc -3'
miRNA:   3'- gaCGgCGUGGCCGCAGCUCGuGCa--UG- -5'
9357 5' -59.1 NC_002512.2 + 117337 0.67 0.845563
Target:  5'- -cGCUgGCGCCGGCGUUcucGCACGa-- -3'
miRNA:   3'- gaCGG-CGUGGCCGCAGcu-CGUGCaug -5'
9357 5' -59.1 NC_002512.2 + 117457 0.72 0.541101
Target:  5'- -aGCUGuCGCCGGUGUCGAuCGCGcUGCu -3'
miRNA:   3'- gaCGGC-GUGGCCGCAGCUcGUGC-AUG- -5'
9357 5' -59.1 NC_002512.2 + 117554 0.66 0.874682
Target:  5'- gCUGCUGUACagcgccaaGGCGUCGAugGCGCu--- -3'
miRNA:   3'- -GACGGCGUGg-------CCGCAGCU--CGUGcaug -5'
9357 5' -59.1 NC_002512.2 + 119219 0.65 0.887429
Target:  5'- gCUGUCGaugaucgccaACCuGGCGUCGGagguggugaugacGUACGUGCg -3'
miRNA:   3'- -GACGGCg---------UGG-CCGCAGCU-------------CGUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 120890 0.69 0.695887
Target:  5'- -cGCC--GCCGGCGccgaCGAGCAgGUACa -3'
miRNA:   3'- gaCGGcgUGGCCGCa---GCUCGUgCAUG- -5'
9357 5' -59.1 NC_002512.2 + 121406 0.68 0.761416
Target:  5'- -aGCCGCGCCuGGCGUgGAGgGag-ACg -3'
miRNA:   3'- gaCGGCGUGG-CCGCAgCUCgUgcaUG- -5'
9357 5' -59.1 NC_002512.2 + 122084 0.67 0.813637
Target:  5'- gCUGCCGCacgcGCCGGaCG-CGAGguCG-GCg -3'
miRNA:   3'- -GACGGCG----UGGCC-GCaGCUCguGCaUG- -5'
9357 5' -59.1 NC_002512.2 + 122123 0.68 0.752303
Target:  5'- -gGCCGCGCUGGacagCGuGgACGUGCg -3'
miRNA:   3'- gaCGGCGUGGCCgca-GCuCgUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 126338 0.69 0.705457
Target:  5'- -cGCCGCGuCCGG-GaCGGGCGCGcACg -3'
miRNA:   3'- gaCGGCGU-GGCCgCaGCUCGUGCaUG- -5'
9357 5' -59.1 NC_002512.2 + 126482 0.73 0.503697
Target:  5'- -cGUCGCGucgcccggauccCCGGCGUUGGGCGCGaGCc -3'
miRNA:   3'- gaCGGCGU------------GGCCGCAGCUCGUGCaUG- -5'
9357 5' -59.1 NC_002512.2 + 126773 0.67 0.813637
Target:  5'- -cGCgGCGgCGGCGgCGA-CGCGUGCc -3'
miRNA:   3'- gaCGgCGUgGCCGCaGCUcGUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 128026 0.69 0.71497
Target:  5'- --cCCGCcCCGGCGUCGAagagcuGCACGg-- -3'
miRNA:   3'- gacGGCGuGGCCGCAGCU------CGUGCaug -5'
9357 5' -59.1 NC_002512.2 + 130546 0.67 0.813637
Target:  5'- aUGCCGgACaGGCGgucCGAGacgACGUACa -3'
miRNA:   3'- gACGGCgUGgCCGCa--GCUCg--UGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 132697 0.68 0.776665
Target:  5'- -cGCCGCagACgGGCGUCGugggcgagauccucGGCcCGUGCc -3'
miRNA:   3'- gaCGGCG--UGgCCGCAGC--------------UCGuGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 135862 0.66 0.874682
Target:  5'- -cGCCGCgaaACCGaGCGUCcGGGuCACGa-- -3'
miRNA:   3'- gaCGGCG---UGGC-CGCAG-CUC-GUGCaug -5'
9357 5' -59.1 NC_002512.2 + 138648 0.67 0.805264
Target:  5'- --cCCGUACgCGGCGUCccugacGAGCACGguggACu -3'
miRNA:   3'- gacGGCGUG-GCCGCAG------CUCGUGCa---UG- -5'
9357 5' -59.1 NC_002512.2 + 138963 0.67 0.813637
Target:  5'- -gGCCGCGCCGGCccCGuuCGCGgcCg -3'
miRNA:   3'- gaCGGCGUGGCCGcaGCucGUGCauG- -5'
9357 5' -59.1 NC_002512.2 + 143684 0.71 0.58906
Target:  5'- -aGCCGgGCgGgGUGUCGGGCACGgaggGCc -3'
miRNA:   3'- gaCGGCgUGgC-CGCAGCUCGUGCa---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.