miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9357 5' -59.1 NC_002512.2 + 147 0.7 0.675642
Target:  5'- -aGCCgggcgggGCGCCGGCGgagGAGCGCGcGCc -3'
miRNA:   3'- gaCGG-------CGUGGCCGCag-CUCGUGCaUG- -5'
9357 5' -59.1 NC_002512.2 + 39177 0.67 0.82186
Target:  5'- aUGCUGauaaGCgGGCGUUGAGaCACGcgACu -3'
miRNA:   3'- gACGGCg---UGgCCGCAGCUC-GUGCa-UG- -5'
9357 5' -59.1 NC_002512.2 + 74507 0.66 0.865548
Target:  5'- -cGCC-CGCCGGCGccgccgccccgaccUCGAGCGCc--- -3'
miRNA:   3'- gaCGGcGUGGCCGC--------------AGCUCGUGcaug -5'
9357 5' -59.1 NC_002512.2 + 74647 0.69 0.695887
Target:  5'- -cGCCGCgACgGGCGggacggccgCGGGCGCGUu- -3'
miRNA:   3'- gaCGGCG-UGgCCGCa--------GCUCGUGCAug -5'
9357 5' -59.1 NC_002512.2 + 75233 0.67 0.83783
Target:  5'- -cGCCGUcgCGGUGaCGAGCGCGgccGCg -3'
miRNA:   3'- gaCGGCGugGCCGCaGCUCGUGCa--UG- -5'
9357 5' -59.1 NC_002512.2 + 88521 0.7 0.686269
Target:  5'- -gGCCGaCACgUGGuCGuucgugaaccccUCGAGCACGUACg -3'
miRNA:   3'- gaCGGC-GUG-GCC-GC------------AGCUCGUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 90384 0.66 0.853121
Target:  5'- uCUGCaCGCucgaggucuuGCCGGCGcCG-GC-CGUGCc -3'
miRNA:   3'- -GACG-GCG----------UGGCCGCaGCuCGuGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 91873 0.7 0.686269
Target:  5'- -gGCCGCcguCCGGCG-CGGGCgGCGgcgcgGCg -3'
miRNA:   3'- gaCGGCGu--GGCCGCaGCUCG-UGCa----UG- -5'
9357 5' -59.1 NC_002512.2 + 93961 0.7 0.686269
Target:  5'- aUGCCGUACCGacucaggacGUGUCGcuGCGCGUccGCg -3'
miRNA:   3'- gACGGCGUGGC---------CGCAGCu-CGUGCA--UG- -5'
9357 5' -59.1 NC_002512.2 + 94976 0.68 0.779322
Target:  5'- -cGCCGCGCCGGUccgCGuacagguGCGCGUccgaGCa -3'
miRNA:   3'- gaCGGCGUGGCCGca-GCu------CGUGCA----UG- -5'
9357 5' -59.1 NC_002512.2 + 96526 0.77 0.316681
Target:  5'- -aGCCGCGCCGGCGgugUGAGC-CGggGCc -3'
miRNA:   3'- gaCGGCGUGGCCGCa--GCUCGuGCa-UG- -5'
9357 5' -59.1 NC_002512.2 + 97759 0.72 0.531655
Target:  5'- -cGCCGCAaCCGGCGcuacCGGGCGC-UGCc -3'
miRNA:   3'- gaCGGCGU-GGCCGCa---GCUCGUGcAUG- -5'
9357 5' -59.1 NC_002512.2 + 99273 0.69 0.705457
Target:  5'- -cGCCGgACgCGGgGUCGAGCAgGa-- -3'
miRNA:   3'- gaCGGCgUG-GCCgCAGCUCGUgCaug -5'
9357 5' -59.1 NC_002512.2 + 103152 0.67 0.829926
Target:  5'- -aGCagGCACuCGGCGUCGGuCACGUu- -3'
miRNA:   3'- gaCGg-CGUG-GCCGCAGCUcGUGCAug -5'
9357 5' -59.1 NC_002512.2 + 105075 0.7 0.657201
Target:  5'- -aGCCGaagaaGCCGGCgGUCGGGUcgACGUGu -3'
miRNA:   3'- gaCGGCg----UGGCCG-CAGCUCG--UGCAUg -5'
9357 5' -59.1 NC_002512.2 + 106634 0.76 0.352578
Target:  5'- aUGCgGCGCCGGuCGUCGAGCuCGa-- -3'
miRNA:   3'- gACGgCGUGGCC-GCAGCUCGuGCaug -5'
9357 5' -59.1 NC_002512.2 + 107228 0.66 0.860496
Target:  5'- -aGCCGCGgucaccgucguCCGGC-UCGAaacGCAgGUGCg -3'
miRNA:   3'- gaCGGCGU-----------GGCCGcAGCU---CGUgCAUG- -5'
9357 5' -59.1 NC_002512.2 + 107849 0.66 0.860496
Target:  5'- -cGCCGCcCCgGGCGUgcgCGAGCGCc--- -3'
miRNA:   3'- gaCGGCGuGG-CCGCA---GCUCGUGcaug -5'
9357 5' -59.1 NC_002512.2 + 108801 0.67 0.845563
Target:  5'- -gGCCGCugCgGGCGcuguuccgCGAG-GCGUGCg -3'
miRNA:   3'- gaCGGCGugG-CCGCa-------GCUCgUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 111334 0.71 0.59876
Target:  5'- aUGCCGUugUuGGCGUCccGGGCGCGcACg -3'
miRNA:   3'- gACGGCGugG-CCGCAG--CUCGUGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.