miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9357 5' -59.1 NC_002512.2 + 114183 0.77 0.303114
Target:  5'- -gGUgGCGCCGGCGUCGGGCcCGgcgGCc -3'
miRNA:   3'- gaCGgCGUGGCCGCAGCUCGuGCa--UG- -5'
9357 5' -59.1 NC_002512.2 + 154700 0.77 0.309841
Target:  5'- -gGCCGU-CCGGCGUCGAGCgGCGcgACg -3'
miRNA:   3'- gaCGGCGuGGCCGCAGCUCG-UGCa-UG- -5'
9357 5' -59.1 NC_002512.2 + 96526 0.77 0.316681
Target:  5'- -aGCCGCGCCGGCGgugUGAGC-CGggGCc -3'
miRNA:   3'- gaCGGCGUGGCCGCa--GCUCGuGCa-UG- -5'
9357 5' -59.1 NC_002512.2 + 189660 0.76 0.337881
Target:  5'- -cGCCGaCACCGGCGUCGGcccuaCugGUACc -3'
miRNA:   3'- gaCGGC-GUGGCCGCAGCUc----GugCAUG- -5'
9357 5' -59.1 NC_002512.2 + 106634 0.76 0.352578
Target:  5'- aUGCgGCGCCGGuCGUCGAGCuCGa-- -3'
miRNA:   3'- gACGgCGUGGCC-GCAGCUCGuGCaug -5'
9357 5' -59.1 NC_002512.2 + 226700 0.75 0.399324
Target:  5'- -cGcCCGCGgCGGCGUCGAGCgACGggagGCc -3'
miRNA:   3'- gaC-GGCGUgGCCGCAGCUCG-UGCa---UG- -5'
9357 5' -59.1 NC_002512.2 + 184465 0.74 0.424137
Target:  5'- -cGCCGCgGCCGGCGccgccgUCGAGCGCccGCa -3'
miRNA:   3'- gaCGGCG-UGGCCGC------AGCUCGUGcaUG- -5'
9357 5' -59.1 NC_002512.2 + 224348 0.74 0.458608
Target:  5'- -cGCCGCGCCGGgGUCGcGgGCGg-- -3'
miRNA:   3'- gaCGGCGUGGCCgCAGCuCgUGCaug -5'
9357 5' -59.1 NC_002512.2 + 126482 0.73 0.503697
Target:  5'- -cGUCGCGucgcccggauccCCGGCGUUGGGCGCGaGCc -3'
miRNA:   3'- gaCGGCGU------------GGCCGCAGCUCGUGCaUG- -5'
9357 5' -59.1 NC_002512.2 + 200721 0.73 0.503697
Target:  5'- gCUGCCGC-CCGGCGguccgaaCGGGU-CGUACc -3'
miRNA:   3'- -GACGGCGuGGCCGCa------GCUCGuGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 97759 0.72 0.531655
Target:  5'- -cGCCGCAaCCGGCGcuacCGGGCGC-UGCc -3'
miRNA:   3'- gaCGGCGU-GGCCGCa---GCUCGUGcAUG- -5'
9357 5' -59.1 NC_002512.2 + 175261 0.72 0.541101
Target:  5'- -gGCCGCGCuCGGCGgguagcuggCGGcCGCGUACa -3'
miRNA:   3'- gaCGGCGUG-GCCGCa--------GCUcGUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 200861 0.72 0.541101
Target:  5'- uCUGCCGCA-UGGCGUCGAcCACGc-- -3'
miRNA:   3'- -GACGGCGUgGCCGCAGCUcGUGCaug -5'
9357 5' -59.1 NC_002512.2 + 117457 0.72 0.541101
Target:  5'- -aGCUGuCGCCGGUGUCGAuCGCGcUGCu -3'
miRNA:   3'- gaCGGC-GUGGCCGCAGCUcGUGC-AUG- -5'
9357 5' -59.1 NC_002512.2 + 219214 0.72 0.550602
Target:  5'- aCUGCCGgGCCGGCcucggcgagGUCGGGauCGUGCu -3'
miRNA:   3'- -GACGGCgUGGCCG---------CAGCUCguGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 113063 0.72 0.569752
Target:  5'- -aGCCGCACgagggccaGGCgGUCGAcgaugcGCACGUACu -3'
miRNA:   3'- gaCGGCGUGg-------CCG-CAGCU------CGUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 199979 0.72 0.569752
Target:  5'- -cGCCGCGuccgcgcgcCCGGCGgggaCGAGCggcccACGUGCa -3'
miRNA:   3'- gaCGGCGU---------GGCCGCa---GCUCG-----UGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 143684 0.71 0.58906
Target:  5'- -aGCCGgGCgGgGUGUCGGGCACGgaggGCc -3'
miRNA:   3'- gaCGGCgUGgC-CGCAGCUCGUGCa---UG- -5'
9357 5' -59.1 NC_002512.2 + 111334 0.71 0.59876
Target:  5'- aUGCCGUugUuGGCGUCccGGGCGCGcACg -3'
miRNA:   3'- gACGGCGugG-CCGCAG--CUCGUGCaUG- -5'
9357 5' -59.1 NC_002512.2 + 212823 0.71 0.61822
Target:  5'- cCUuCCGCgccGCCGGgGUUGGGCGCGgGCg -3'
miRNA:   3'- -GAcGGCG---UGGCCgCAGCUCGUGCaUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.