miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9358 3' -52.4 NC_002512.2 + 122883 0.67 0.986121
Target:  5'- -cGGCCgccuaccgagaggGAGACGACGaGGAcgACGGCa -3'
miRNA:   3'- cuCCGGag-----------CUUUGUUGCaCCU--UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 75671 0.67 0.985453
Target:  5'- -cGGCCgcgCGAgaGACGACGauggGGggUGGg -3'
miRNA:   3'- cuCCGGa--GCU--UUGUUGCa---CCuuGCCg -5'
9358 3' -52.4 NC_002512.2 + 150666 0.67 0.985453
Target:  5'- cGA-GCCUCGAGGuCcGCG-GGcGCGGCg -3'
miRNA:   3'- -CUcCGGAGCUUU-GuUGCaCCuUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 156493 0.67 0.985453
Target:  5'- cGGGCUgggCGGAcACGGCGgccuGGGCGGCg -3'
miRNA:   3'- cUCCGGa--GCUU-UGUUGCac--CUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 190753 0.67 0.985453
Target:  5'- gGAGGCCggGAcGCucuucuACGUGGAcCGGg -3'
miRNA:   3'- -CUCCGGagCUuUGu-----UGCACCUuGCCg -5'
9358 3' -52.4 NC_002512.2 + 194538 0.67 0.985453
Target:  5'- gGAGGCC-CGGGACAAcCGUaaccgccccGGGAaGGCc -3'
miRNA:   3'- -CUCCGGaGCUUUGUU-GCA---------CCUUgCCG- -5'
9358 3' -52.4 NC_002512.2 + 170352 0.67 0.98511
Target:  5'- -uGGCCgCGAu-CAGCGUGGccagggccgugcGCGGCg -3'
miRNA:   3'- cuCCGGaGCUuuGUUGCACCu-----------UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 125163 0.68 0.983675
Target:  5'- gGAGaGCUUCGAgGACuuCGUGGc-CGGCc -3'
miRNA:   3'- -CUC-CGGAGCU-UUGuuGCACCuuGCCG- -5'
9358 3' -52.4 NC_002512.2 + 95917 0.68 0.983675
Target:  5'- cGAGGaCCUCG-AugGGgGUgaaGGGACGGUu -3'
miRNA:   3'- -CUCC-GGAGCuUugUUgCA---CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 203371 0.68 0.981737
Target:  5'- cAGGCCgCGGuugcuCAGCaucaGGAACGGCa -3'
miRNA:   3'- cUCCGGaGCUuu---GUUGca--CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 90660 0.68 0.981737
Target:  5'- -cGGUCUCGGAGuCGGCG-GccGCGGCg -3'
miRNA:   3'- cuCCGGAGCUUU-GUUGCaCcuUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 111623 0.68 0.981737
Target:  5'- -cGGCCagCGAGGCGcuguagACGUGGugcuccagGACGGUg -3'
miRNA:   3'- cuCCGGa-GCUUUGU------UGCACC--------UUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 220347 0.68 0.981737
Target:  5'- -cGGCCUCGucAACGcCGUGGccgUGGCc -3'
miRNA:   3'- cuCCGGAGCu-UUGUuGCACCuu-GCCG- -5'
9358 3' -52.4 NC_002512.2 + 135330 0.68 0.981737
Target:  5'- -cGGCaa-GAAccugcugaucACGGCGcUGGAACGGCg -3'
miRNA:   3'- cuCCGgagCUU----------UGUUGC-ACCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 91870 0.68 0.979632
Target:  5'- cGAGGCCgcCGuc-CGGCGcGGGcgGCGGCg -3'
miRNA:   3'- -CUCCGGa-GCuuuGUUGCaCCU--UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 106772 0.68 0.979632
Target:  5'- -cGGCCgcc-GACGGCGcGGGACGGUu -3'
miRNA:   3'- cuCCGGagcuUUGUUGCaCCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 74636 0.68 0.979632
Target:  5'- cGA-GCCgUCGAcgccGCGACGggcGGGACGGCc -3'
miRNA:   3'- -CUcCGG-AGCUu---UGUUGCa--CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 227215 0.68 0.977351
Target:  5'- -cGGaCCagGAGGCGGCGgaccgGGAggcGCGGCg -3'
miRNA:   3'- cuCC-GGagCUUUGUUGCa----CCU---UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 191027 0.68 0.977351
Target:  5'- aGGuGCCUgCGAGGCGgggcgcggcgcACGUGGAcCGGUc -3'
miRNA:   3'- cUC-CGGA-GCUUUGU-----------UGCACCUuGCCG- -5'
9358 3' -52.4 NC_002512.2 + 174104 0.68 0.977351
Target:  5'- uAGGgCUCGGAACGG-GUGG-ACGGg -3'
miRNA:   3'- cUCCgGAGCUUUGUUgCACCuUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.