miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9358 3' -52.4 NC_002512.2 + 95917 0.68 0.983675
Target:  5'- cGAGGaCCUCG-AugGGgGUgaaGGGACGGUu -3'
miRNA:   3'- -CUCC-GGAGCuUugUUgCA---CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 100337 0.72 0.872812
Target:  5'- cGGGCCUCGu--CGACGcccaauagGGAgACGGCg -3'
miRNA:   3'- cUCCGGAGCuuuGUUGCa-------CCU-UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 100612 0.7 0.938868
Target:  5'- -cGG-CUCGAcgcacGACAGCuucUGGAGCGGCa -3'
miRNA:   3'- cuCCgGAGCU-----UUGUUGc--ACCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 101873 0.66 0.995853
Target:  5'- -cGGCCgcagcagccgcgggCGAAAgcgcggggacgcCGACG-GGGGCGGCg -3'
miRNA:   3'- cuCCGGa-------------GCUUU------------GUUGCaCCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 103053 0.72 0.900055
Target:  5'- gGGGGCa--GGAGC-GCGgGGAACGGCa -3'
miRNA:   3'- -CUCCGgagCUUUGuUGCaCCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 103328 0.7 0.934029
Target:  5'- cGAGGCC-CG-GGCGGCGUagcccGGGGCGGa -3'
miRNA:   3'- -CUCCGGaGCuUUGUUGCA-----CCUUGCCg -5'
9358 3' -52.4 NC_002512.2 + 103672 0.7 0.943023
Target:  5'- cGAGcGCCUCGAcgucgcaGAgGGCGgcGGAcGCGGCg -3'
miRNA:   3'- -CUC-CGGAGCU-------UUgUUGCa-CCU-UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 104514 0.7 0.951988
Target:  5'- aGGGCCgcuacgCGGuggagaacaagGACAACGUGGuguCGGUg -3'
miRNA:   3'- cUCCGGa-----GCU-----------UUGUUGCACCuu-GCCG- -5'
9358 3' -52.4 NC_002512.2 + 106722 0.69 0.963072
Target:  5'- -cGGCCUCGGccuCGGCG-GcGAucGCGGCg -3'
miRNA:   3'- cuCCGGAGCUuu-GUUGCaC-CU--UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 106772 0.68 0.979632
Target:  5'- -cGGCCgcc-GACGGCGcGGGACGGUu -3'
miRNA:   3'- cuCCGGagcuUUGUUGCaCCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 109844 0.75 0.78162
Target:  5'- cGGGCgUCGggGacCGGCGUGGcGGCGGUg -3'
miRNA:   3'- cUCCGgAGCuuU--GUUGCACC-UUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 111623 0.68 0.981737
Target:  5'- -cGGCCagCGAGGCGcuguagACGUGGugcuccagGACGGUg -3'
miRNA:   3'- cuCCGGa-GCUUUGU------UGCACC--------UUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 111698 0.66 0.993123
Target:  5'- -cGGCCUCGGggucgcgGAUGACGacGGAGucucCGGCg -3'
miRNA:   3'- cuCCGGAGCU-------UUGUUGCa-CCUU----GCCG- -5'
9358 3' -52.4 NC_002512.2 + 111888 0.67 0.990894
Target:  5'- aGGGCCUCGAGGCAAUccagcaccccGAGCaGCa -3'
miRNA:   3'- cUCCGGAGCUUUGUUGcac-------CUUGcCG- -5'
9358 3' -52.4 NC_002512.2 + 113251 0.75 0.772372
Target:  5'- aGGaGCCUCG--GCAGCGaggGGGGCGGCc -3'
miRNA:   3'- cUC-CGGAGCuuUGUUGCa--CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 114056 0.7 0.938868
Target:  5'- cGGGCC-CGGAACAGCGguaGGcgcAGCGGg -3'
miRNA:   3'- cUCCGGaGCUUUGUUGCa--CC---UUGCCg -5'
9358 3' -52.4 NC_002512.2 + 117679 0.67 0.989909
Target:  5'- uGGGCUacgggUCGAcgAGCuGCGUGGcgcaccuGCGGCg -3'
miRNA:   3'- cUCCGG-----AGCU--UUGuUGCACCu------UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 119110 0.75 0.734235
Target:  5'- -cGGCCUCGgcGCAGC-UGcGGACGGUg -3'
miRNA:   3'- cuCCGGAGCuuUGUUGcAC-CUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 122122 0.73 0.842176
Target:  5'- -cGGCCgCGcuGGACAGCGUGGAcguGCGGa -3'
miRNA:   3'- cuCCGGaGC--UUUGUUGCACCU---UGCCg -5'
9358 3' -52.4 NC_002512.2 + 122883 0.67 0.986121
Target:  5'- -cGGCCgccuaccgagaggGAGACGACGaGGAcgACGGCa -3'
miRNA:   3'- cuCCGGag-----------CUUUGUUGCaCCU--UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.