miRNA display CGI


Results 1 - 20 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9358 3' -52.4 NC_002512.2 + 143 0.66 0.993217
Target:  5'- gGGGaGCCgggCGggGCGccgGCGgaGGAGCGcGCg -3'
miRNA:   3'- -CUC-CGGa--GCuuUGU---UGCa-CCUUGC-CG- -5'
9358 3' -52.4 NC_002512.2 + 4270 0.67 0.991582
Target:  5'- aAGGCCUUaaaucugagccugcaGGAACAGauccacugGUGGAACGGa -3'
miRNA:   3'- cUCCGGAG---------------CUUUGUUg-------CACCUUGCCg -5'
9358 3' -52.4 NC_002512.2 + 35108 0.68 0.974888
Target:  5'- --uGCCUCGgcGCAcCGUcGGGAUGGUa -3'
miRNA:   3'- cucCGGAGCuuUGUuGCA-CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 59473 0.69 0.972235
Target:  5'- cGAGGcCCUCGc--CAGCGggucucGAGCGGCc -3'
miRNA:   3'- -CUCC-GGAGCuuuGUUGCac----CUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 74636 0.68 0.979632
Target:  5'- cGA-GCCgUCGAcgccGCGACGggcGGGACGGCc -3'
miRNA:   3'- -CUcCGG-AGCUu---UGUUGCa--CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 75671 0.67 0.985453
Target:  5'- -cGGCCgcgCGAgaGACGACGauggGGggUGGg -3'
miRNA:   3'- cuCCGGa--GCU--UUGUUGCa---CCuuGCCg -5'
9358 3' -52.4 NC_002512.2 + 75784 0.68 0.974888
Target:  5'- gGAGGa--CGggGCAgaGCGggGGAGCGGUa -3'
miRNA:   3'- -CUCCggaGCuuUGU--UGCa-CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 89608 0.66 0.995595
Target:  5'- -uGGCCUCc--AUGACGUGGGcCGGa -3'
miRNA:   3'- cuCCGGAGcuuUGUUGCACCUuGCCg -5'
9358 3' -52.4 NC_002512.2 + 90513 0.76 0.704683
Target:  5'- cGAGGCCggCGGcgGACGACG-GGAacGCGGUg -3'
miRNA:   3'- -CUCCGGa-GCU--UUGUUGCaCCU--UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 90660 0.68 0.981737
Target:  5'- -cGGUCUCGGAGuCGGCG-GccGCGGCg -3'
miRNA:   3'- cuCCGGAGCUUU-GUUGCaCcuUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 91305 0.66 0.993217
Target:  5'- gGAGGUgUCG--GCGGCGcagagGGAgcucACGGCg -3'
miRNA:   3'- -CUCCGgAGCuuUGUUGCa----CCU----UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 91870 0.68 0.979632
Target:  5'- cGAGGCCgcCGuc-CGGCGcGGGcgGCGGCg -3'
miRNA:   3'- -CUCCGGa-GCuuuGUUGCaCCU--UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 92551 0.68 0.977351
Target:  5'- -cGGCCgCGGcGACGACGUcGGAggcgccgacgccGCGGCc -3'
miRNA:   3'- cuCCGGaGCU-UUGUUGCA-CCU------------UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 92608 0.78 0.583317
Target:  5'- cGAGGCCggUCGcGACGACGgacGGACGGCg -3'
miRNA:   3'- -CUCCGG--AGCuUUGUUGCac-CUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 93758 0.66 0.994893
Target:  5'- gGAGGgCUCGGAGgGAgGgagggaggucgGGAGCGGa -3'
miRNA:   3'- -CUCCgGAGCUUUgUUgCa----------CCUUGCCg -5'
9358 3' -52.4 NC_002512.2 + 94021 0.67 0.991582
Target:  5'- aGGGCCUCGuccgccagcuccucgGcgguGACGGCGaccgGGAAgGGCg -3'
miRNA:   3'- cUCCGGAGC---------------U----UUGUUGCa---CCUUgCCG- -5'
9358 3' -52.4 NC_002512.2 + 94627 0.75 0.734235
Target:  5'- cAGGCCUCGucgagcGCGGCGcGGAcgACGGCc -3'
miRNA:   3'- cUCCGGAGCuu----UGUUGCaCCU--UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 94832 0.68 0.977351
Target:  5'- gGAGccGCCggaGGAAgAGCGUGGccGCGGCg -3'
miRNA:   3'- -CUC--CGGag-CUUUgUUGCACCu-UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 95518 0.68 0.974888
Target:  5'- -cGGaCCUCGAAcaGCu-CGUGG-ACGGUg -3'
miRNA:   3'- cuCC-GGAGCUU--UGuuGCACCuUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 95692 0.67 0.991128
Target:  5'- cGGGCCUC----CGGCG-GGGACGGg -3'
miRNA:   3'- cUCCGGAGcuuuGUUGCaCCUUGCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.