miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9358 3' -52.4 NC_002512.2 + 228220 0.87 0.217705
Target:  5'- cGAGGCCgggCGAGACGGCG-GGAAgGGCg -3'
miRNA:   3'- -CUCCGGa--GCUUUGUUGCaCCUUgCCG- -5'
9358 3' -52.4 NC_002512.2 + 153387 0.84 0.310405
Target:  5'- -cGGUC-CGGAGCGACGUGGAgcGCGGCg -3'
miRNA:   3'- cuCCGGaGCUUUGUUGCACCU--UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 185564 0.8 0.485232
Target:  5'- -uGGCCgUCGAGGgGACcUGGAACGGCa -3'
miRNA:   3'- cuCCGG-AGCUUUgUUGcACCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 223888 0.8 0.513949
Target:  5'- gGAGGCCgaggaGGAGgAGCG-GGAGCGGCg -3'
miRNA:   3'- -CUCCGGag---CUUUgUUGCaCCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 127239 0.79 0.553257
Target:  5'- cGGGCaCgacCGAGGCGACGgccGGAACGGCg -3'
miRNA:   3'- cUCCG-Ga--GCUUUGUUGCa--CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 92608 0.78 0.583317
Target:  5'- cGAGGCCggUCGcGACGACGgacGGACGGCg -3'
miRNA:   3'- -CUCCGG--AGCuUUGUUGCac-CUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 164210 0.77 0.634014
Target:  5'- aGGGCCUCGggGCcgcCG-GGAAgGGCa -3'
miRNA:   3'- cUCCGGAGCuuUGuu-GCaCCUUgCCG- -5'
9358 3' -52.4 NC_002512.2 + 134403 0.76 0.704683
Target:  5'- -uGGCCUCGAGGCuccuACGgaUGGGccuguGCGGCa -3'
miRNA:   3'- cuCCGGAGCUUUGu---UGC--ACCU-----UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 90513 0.76 0.704683
Target:  5'- cGAGGCCggCGGcgGACGACG-GGAacGCGGUg -3'
miRNA:   3'- -CUCCGGa-GCU--UUGUUGCaCCU--UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 94627 0.75 0.734235
Target:  5'- cAGGCCUCGucgagcGCGGCGcGGAcgACGGCc -3'
miRNA:   3'- cUCCGGAGCuu----UGUUGCaCCU--UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 119110 0.75 0.734235
Target:  5'- -cGGCCUCGgcGCAGC-UGcGGACGGUg -3'
miRNA:   3'- cuCCGGAGCuuUGUUGcAC-CUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 157164 0.75 0.753515
Target:  5'- cGGGCCg---GGCGGCGUGGGcgGCGGCg -3'
miRNA:   3'- cUCCGGagcuUUGUUGCACCU--UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 189592 0.75 0.763001
Target:  5'- cGGGuCCUCGGGACGACGUucGuGcGCGGCg -3'
miRNA:   3'- cUCC-GGAGCUUUGUUGCA--C-CuUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 113251 0.75 0.772372
Target:  5'- aGGaGCCUCG--GCAGCGaggGGGGCGGCc -3'
miRNA:   3'- cUC-CGGAGCuuUGUUGCa--CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 154707 0.75 0.772372
Target:  5'- -cGGCgUCG-AGCGGCGcgacGGAACGGCg -3'
miRNA:   3'- cuCCGgAGCuUUGUUGCa---CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 228531 0.75 0.772372
Target:  5'- gGAGGCgaCGAGACGACacgGGAggcggACGGCa -3'
miRNA:   3'- -CUCCGgaGCUUUGUUGca-CCU-----UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 192576 0.75 0.774232
Target:  5'- cGGGGCCUCGGAGCGgaccgucccgcugcuGCGgcgcgcgcggcgGGcGACGGCg -3'
miRNA:   3'- -CUCCGGAGCUUUGU---------------UGCa-----------CC-UUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 109844 0.75 0.78162
Target:  5'- cGGGCgUCGggGacCGGCGUGGcGGCGGUg -3'
miRNA:   3'- cUCCGgAGCuuU--GUUGCACC-UUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 221079 0.74 0.817201
Target:  5'- -cGGCggCGGAACGGCGUGGGGgacgcccucCGGCg -3'
miRNA:   3'- cuCCGgaGCUUUGUUGCACCUU---------GCCG- -5'
9358 3' -52.4 NC_002512.2 + 122122 0.73 0.842176
Target:  5'- -cGGCCgCGcuGGACAGCGUGGAcguGCGGa -3'
miRNA:   3'- cuCCGGaGC--UUUGUUGCACCU---UGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.