miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9358 5' -55.5 NC_002512.2 + 14019 0.8 0.327027
Target:  5'- gAGUGUGUgCGuCGGAGUUUUGGGGUg -3'
miRNA:   3'- aUCGCGCAaGCuGCCUCAAAGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 216041 0.8 0.356826
Target:  5'- gGGCGCGcgagugCGACGGGcgUUCGGGGCc -3'
miRNA:   3'- aUCGCGCaa----GCUGCCUcaAAGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 146698 0.79 0.372425
Target:  5'- -cGCGCGgacggCGACGGAGacgacggCGGGGCg -3'
miRNA:   3'- auCGCGCaa---GCUGCCUCaaa----GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 166023 0.78 0.448115
Target:  5'- gGGaCGCGUUCGGCGGccGUUcCGGGGUc -3'
miRNA:   3'- aUC-GCGCAAGCUGCCu-CAAaGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 129098 0.76 0.521998
Target:  5'- aAGCGUG-UCGGCGGAGgcgUUCcGGGuGCa -3'
miRNA:   3'- aUCGCGCaAGCUGCCUCa--AAG-CCC-CG- -5'
9358 5' -55.5 NC_002512.2 + 90487 0.76 0.550934
Target:  5'- cGGgGCGUccUCGACGGGa--UCGGGGCc -3'
miRNA:   3'- aUCgCGCA--AGCUGCCUcaaAGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 160871 0.75 0.556783
Target:  5'- aGGgGCGgacacgUCGGCGGAGgguucgggaagCGGGGCg -3'
miRNA:   3'- aUCgCGCa-----AGCUGCCUCaaa--------GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 158973 0.75 0.600131
Target:  5'- gAGCG-GUUCGGCGGccacggCGGGGCg -3'
miRNA:   3'- aUCGCgCAAGCUGCCucaaa-GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 222199 0.74 0.62001
Target:  5'- cGGCGuCGUccguuucuUCGuCGGGGUggccgUCGGGGCc -3'
miRNA:   3'- aUCGC-GCA--------AGCuGCCUCAa----AGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 174402 0.74 0.638928
Target:  5'- gUGGCGCGUUcccgcggCGcCGGGGccuccgUCGGGGCu -3'
miRNA:   3'- -AUCGCGCAA-------GCuGCCUCaa----AGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 198668 0.74 0.649876
Target:  5'- cAGCaGCGUggCGACGGGGggcccgaagUCGGGGg -3'
miRNA:   3'- aUCG-CGCAa-GCUGCCUCaa-------AGCCCCg -5'
9358 5' -55.5 NC_002512.2 + 193525 0.74 0.659814
Target:  5'- cGGUGCacucGUUCuGACGGAGUccgCGGGGUc -3'
miRNA:   3'- aUCGCG----CAAG-CUGCCUCAaa-GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 101918 0.73 0.666759
Target:  5'- cGGCGUGUUcuccaugcggggacCGACGGAGagcgaaCGGGGCc -3'
miRNA:   3'- aUCGCGCAA--------------GCUGCCUCaaa---GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 191268 0.72 0.718723
Target:  5'- gGGCGgGgaggcggCGACGGGGagggcggCGGGGCg -3'
miRNA:   3'- aUCGCgCaa-----GCUGCCUCaaa----GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 157127 0.72 0.718723
Target:  5'- cGGCGuCGggggUCGGCGGcGGgccCGGGGCg -3'
miRNA:   3'- aUCGC-GCa---AGCUGCC-UCaaaGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 156762 0.72 0.728344
Target:  5'- gGGCGUGUacUCGACGGGcGUcUC-GGGCg -3'
miRNA:   3'- aUCGCGCA--AGCUGCCU-CAaAGcCCCG- -5'
9358 5' -55.5 NC_002512.2 + 93724 0.72 0.737887
Target:  5'- -cGCGCGgcggaUCGACGGGGa--CGGGGa -3'
miRNA:   3'- auCGCGCa----AGCUGCCUCaaaGCCCCg -5'
9358 5' -55.5 NC_002512.2 + 165705 0.72 0.747342
Target:  5'- -cGUGCGUcugcuucgUCGuCGGGGggUCGGGGg -3'
miRNA:   3'- auCGCGCA--------AGCuGCCUCaaAGCCCCg -5'
9358 5' -55.5 NC_002512.2 + 94643 0.72 0.756702
Target:  5'- cGGCGCGgaCGACGGccucgAGgcggccCGGGGCc -3'
miRNA:   3'- aUCGCGCaaGCUGCC-----UCaaa---GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 189871 0.71 0.793015
Target:  5'- -cGCGCGUcggagaCGGCGGAGacggCGGcGGCg -3'
miRNA:   3'- auCGCGCAa-----GCUGCCUCaaa-GCC-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.