miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9358 5' -55.5 NC_002512.2 + 170 0.67 0.937551
Target:  5'- gAGCGCGcgCcgggaggGACGGGGgcgagaaGGGGCc -3'
miRNA:   3'- aUCGCGCaaG-------CUGCCUCaaag---CCCCG- -5'
9358 5' -55.5 NC_002512.2 + 281 0.66 0.97122
Target:  5'- gAGCG-GcgCGACGGGGggcCaGGGCa -3'
miRNA:   3'- aUCGCgCaaGCUGCCUCaaaGcCCCG- -5'
9358 5' -55.5 NC_002512.2 + 14019 0.8 0.327027
Target:  5'- gAGUGUGUgCGuCGGAGUUUUGGGGUg -3'
miRNA:   3'- aUCGCGCAaGCuGCCUCAAAGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 34388 0.69 0.886917
Target:  5'- aUGGcCGCGUUCGACGGuGaugaugaUUGGcGGCc -3'
miRNA:   3'- -AUC-GCGCAAGCUGCCuCaa-----AGCC-CCG- -5'
9358 5' -55.5 NC_002512.2 + 74284 0.68 0.928236
Target:  5'- --aCGCGUUcCGACGGG----UGGGGCg -3'
miRNA:   3'- aucGCGCAA-GCUGCCUcaaaGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 75756 0.7 0.849447
Target:  5'- gAGCGCGcgUCGgagaccGCGGAGcccgggaggaCGGGGCa -3'
miRNA:   3'- aUCGCGCa-AGC------UGCCUCaaa-------GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 89431 0.68 0.928236
Target:  5'- -cGgGCG-UCGGCGGGGUcacgUCcGGGCc -3'
miRNA:   3'- auCgCGCaAGCUGCCUCAa---AGcCCCG- -5'
9358 5' -55.5 NC_002512.2 + 90487 0.76 0.550934
Target:  5'- cGGgGCGUccUCGACGGGa--UCGGGGCc -3'
miRNA:   3'- aUCgCGCA--AGCUGCCUcaaAGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 91883 0.66 0.96836
Target:  5'- cGGCGCGggCGGCGGcg---CGGcGCa -3'
miRNA:   3'- aUCGCGCaaGCUGCCucaaaGCCcCG- -5'
9358 5' -55.5 NC_002512.2 + 93461 0.7 0.850987
Target:  5'- gAGCGcCGggaucgUGGCGGAGaccuacUUCGGGGUa -3'
miRNA:   3'- aUCGC-GCaa----GCUGCCUCa-----AAGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 93724 0.72 0.737887
Target:  5'- -cGCGCGgcggaUCGACGGGGa--CGGGGa -3'
miRNA:   3'- auCGCGCa----AGCUGCCUCaaaGCCCCg -5'
9358 5' -55.5 NC_002512.2 + 94643 0.72 0.756702
Target:  5'- cGGCGCGgaCGACGGccucgAGgcggccCGGGGCc -3'
miRNA:   3'- aUCGCGCaaGCUGCC-----UCaaa---GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 94794 0.7 0.858571
Target:  5'- gGGCGCGcaCGacGCGGAGacgCGGGGg -3'
miRNA:   3'- aUCGCGCaaGC--UGCCUCaaaGCCCCg -5'
9358 5' -55.5 NC_002512.2 + 95622 0.67 0.954903
Target:  5'- -cGCGCGgaCGACGaAGgccagGGGGCg -3'
miRNA:   3'- auCGCGCaaGCUGCcUCaaag-CCCCG- -5'
9358 5' -55.5 NC_002512.2 + 95781 0.68 0.928236
Target:  5'- gGGgGCGUcCGAgCGGuAGgcgcCGGGGCg -3'
miRNA:   3'- aUCgCGCAaGCU-GCC-UCaaa-GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 96525 0.68 0.917548
Target:  5'- gAGcCGCGc-CGGCGGuGUgagcCGGGGCc -3'
miRNA:   3'- aUC-GCGCaaGCUGCCuCAaa--GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 99501 0.67 0.93324
Target:  5'- aGGCGUGccaGACGGGGUUggCGGccuGGCc -3'
miRNA:   3'- aUCGCGCaagCUGCCUCAAa-GCC---CCG- -5'
9358 5' -55.5 NC_002512.2 + 101443 0.66 0.965303
Target:  5'- cGGCGCGg-CGACGccGAGag-CGGGGg -3'
miRNA:   3'- aUCGCGCaaGCUGC--CUCaaaGCCCCg -5'
9358 5' -55.5 NC_002512.2 + 101918 0.73 0.666759
Target:  5'- cGGCGUGUUcuccaugcggggacCGACGGAGagcgaaCGGGGCc -3'
miRNA:   3'- aUCGCGCAA--------------GCUGCCUCaaa---GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 108996 0.67 0.939408
Target:  5'- ---aGCGggCGACGGAGgagagggaccucgaGGGGCg -3'
miRNA:   3'- aucgCGCaaGCUGCCUCaaag----------CCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.