miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9359 3' -60.2 NC_002512.2 + 106586 0.66 0.868446
Target:  5'- -aCCCGCUUCuuGGCgaaCCGGgccaGCCGGc -3'
miRNA:   3'- ggGGGCGGAG--UCGaa-GGCUag--CGGCC- -5'
9359 3' -60.2 NC_002512.2 + 106724 0.7 0.654285
Target:  5'- gCCUCgGCCUCGGCgg-CGAUCGCgGc -3'
miRNA:   3'- -GGGGgCGGAGUCGaagGCUAGCGgCc -5'
9359 3' -60.2 NC_002512.2 + 107823 0.72 0.531736
Target:  5'- gCCCCCGCUgucgucaCAGCcgCCGA-CGCCGc -3'
miRNA:   3'- -GGGGGCGGa------GUCGaaGGCUaGCGGCc -5'
9359 3' -60.2 NC_002512.2 + 107877 0.73 0.469012
Target:  5'- uCCgCCGCCUcCGGCcccUCCGggCGCCGa -3'
miRNA:   3'- -GGgGGCGGA-GUCGa--AGGCuaGCGGCc -5'
9359 3' -60.2 NC_002512.2 + 107970 0.67 0.807768
Target:  5'- gCCgCCGCCUCGucccgcucGCUccCCGcgcGUCGCCGa -3'
miRNA:   3'- -GGgGGCGGAGU--------CGAa-GGC---UAGCGGCc -5'
9359 3' -60.2 NC_002512.2 + 108062 0.68 0.782569
Target:  5'- cCCCCCGUC-CGGCcgacggCGAUCGUCGu -3'
miRNA:   3'- -GGGGGCGGaGUCGaag---GCUAGCGGCc -5'
9359 3' -60.2 NC_002512.2 + 108110 0.77 0.301093
Target:  5'- gUCCCCGCCUCGGCggUCCGcgGUC-CCGa -3'
miRNA:   3'- -GGGGGCGGAGUCGa-AGGC--UAGcGGCc -5'
9359 3' -60.2 NC_002512.2 + 109111 0.74 0.43491
Target:  5'- gCCCCCGCCgaCGGCcgCCGAguccagcaCGUCGGa -3'
miRNA:   3'- -GGGGGCGGa-GUCGaaGGCUa-------GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 111104 0.69 0.720027
Target:  5'- gCUCCCGCC-CGGCggCgGAggCGCCGc -3'
miRNA:   3'- -GGGGGCGGaGUCGaaGgCUa-GCGGCc -5'
9359 3' -60.2 NC_002512.2 + 111761 0.74 0.43491
Target:  5'- gCCCCCGCCcccuccccgUCAGCgauacggCCGGUcCGCgCGGu -3'
miRNA:   3'- -GGGGGCGG---------AGUCGaa-----GGCUA-GCG-GCC- -5'
9359 3' -60.2 NC_002512.2 + 115041 0.71 0.587765
Target:  5'- cCCCCUGCUUCGuGCUgcggacgCUGAUCGaacaCGGg -3'
miRNA:   3'- -GGGGGCGGAGU-CGAa------GGCUAGCg---GCC- -5'
9359 3' -60.2 NC_002512.2 + 115850 0.77 0.307626
Target:  5'- gCCCCUGCCUCgaGGCguucgCCGAggcgggccCGCCGGa -3'
miRNA:   3'- -GGGGGCGGAG--UCGaa---GGCUa-------GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 117129 0.67 0.823889
Target:  5'- gCCCCGUCggCGGCgUUCGAgUCGCUGc -3'
miRNA:   3'- gGGGGCGGa-GUCGaAGGCU-AGCGGCc -5'
9359 3' -60.2 NC_002512.2 + 119944 0.68 0.773926
Target:  5'- gCCCCCGCacgCGGUggacUUCGuggCGCUGGg -3'
miRNA:   3'- -GGGGGCGga-GUCGa---AGGCua-GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 121136 0.69 0.720027
Target:  5'- -aCCCGUCgaCGGCggCCGAgaCGCCGGc -3'
miRNA:   3'- ggGGGCGGa-GUCGaaGGCUa-GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 124733 0.69 0.709844
Target:  5'- uUCCCCGCCgacUCGGCcugUUCGuggagccGUCGUCGGc -3'
miRNA:   3'- -GGGGGCGG---AGUCGa--AGGC-------UAGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 126682 0.71 0.616224
Target:  5'- --gCCGCCUCGGauacccCCGcUCGCCGGg -3'
miRNA:   3'- gggGGCGGAGUCgaa---GGCuAGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 128399 0.73 0.469012
Target:  5'- aCCCCGUCUCgAGC--CCGGuggcggggUCGCCGGa -3'
miRNA:   3'- gGGGGCGGAG-UCGaaGGCU--------AGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 129672 0.67 0.815901
Target:  5'- aCgCCGCCUCgacGGCguagcCCGAaUCGCCGu -3'
miRNA:   3'- gGgGGCGGAG---UCGaa---GGCU-AGCGGCc -5'
9359 3' -60.2 NC_002512.2 + 129840 0.68 0.738334
Target:  5'- gCCCCCGCguCUCAGCgcCCGG-CGgaGGa -3'
miRNA:   3'- -GGGGGCG--GAGUCGaaGGCUaGCggCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.