miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9359 3' -60.2 NC_002512.2 + 2868 0.68 0.738334
Target:  5'- cCCUCCGuCCUCAGUUUCUccagcucgCGCCGc -3'
miRNA:   3'- -GGGGGC-GGAGUCGAAGGcua-----GCGGCc -5'
9359 3' -60.2 NC_002512.2 + 4460 0.68 0.773056
Target:  5'- uCgUCCGCCUCAGUUgUCUGAgauguacUCGCCa- -3'
miRNA:   3'- -GgGGGCGGAGUCGA-AGGCU-------AGCGGcc -5'
9359 3' -60.2 NC_002512.2 + 5907 0.66 0.854275
Target:  5'- gCUgCgGUCUCGGCUUCCGAg-GUCGa -3'
miRNA:   3'- -GGgGgCGGAGUCGAAGGCUagCGGCc -5'
9359 3' -60.2 NC_002512.2 + 33707 0.66 0.875259
Target:  5'- uUCCCGUCUgcggaaCAGCgucuugcggaUCCGGaCGCCGGu -3'
miRNA:   3'- gGGGGCGGA------GUCGa---------AGGCUaGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 74603 0.68 0.771312
Target:  5'- gCCCuccgucggcucgagCCGCCUCGGCUcCCGcgaGCCGu -3'
miRNA:   3'- -GGG--------------GGCGGAGUCGAaGGCuagCGGCc -5'
9359 3' -60.2 NC_002512.2 + 77137 0.67 0.815901
Target:  5'- aCCUCGCCgUCGGgggacCUUCCGAcCGCCc- -3'
miRNA:   3'- gGGGGCGG-AGUC-----GAAGGCUaGCGGcc -5'
9359 3' -60.2 NC_002512.2 + 82344 0.66 0.86145
Target:  5'- aCCCaCCGCUuaAGCgUUUCGcgccucgCGCCGGg -3'
miRNA:   3'- -GGG-GGCGGagUCG-AAGGCua-----GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 87830 0.71 0.58493
Target:  5'- uCCCCCGgccgggcgucgggcCCUC-GCggCgGGUCGCCGGc -3'
miRNA:   3'- -GGGGGC--------------GGAGuCGaaGgCUAGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 90094 0.66 0.846926
Target:  5'- gCCCCCGCC--GGCcuggaGGgugCGCCGGa -3'
miRNA:   3'- -GGGGGCGGagUCGaagg-CUa--GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 90610 0.69 0.70146
Target:  5'- gCCCCC-CUUC-GCccCCGcgCGCCGGg -3'
miRNA:   3'- -GGGGGcGGAGuCGaaGGCuaGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 93717 0.68 0.74737
Target:  5'- aCCCCGCCgcgCGGCg---GAUCGaCGGg -3'
miRNA:   3'- gGGGGCGGa--GUCGaaggCUAGCgGCC- -5'
9359 3' -60.2 NC_002512.2 + 94082 0.67 0.799496
Target:  5'- cCCCCCGCgaCGGCggcggCCGGUccgacuccucCGCCa- -3'
miRNA:   3'- -GGGGGCGgaGUCGaa---GGCUA----------GCGGcc -5'
9359 3' -60.2 NC_002512.2 + 94558 0.68 0.765174
Target:  5'- aCCCCGgCgCGGCUgacgCCGAccucggggacCGCCGGa -3'
miRNA:   3'- gGGGGCgGaGUCGAa---GGCUa---------GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 94878 0.68 0.750961
Target:  5'- -gCCCGaauCCUCcaggacgaacggguaGGCgucCCGGUCGCCGGg -3'
miRNA:   3'- ggGGGC---GGAG---------------UCGaa-GGCUAGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 95555 0.69 0.720027
Target:  5'- gCUCgGCCgCGGCgagUCCGucggCGCCGGc -3'
miRNA:   3'- gGGGgCGGaGUCGa--AGGCua--GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 96584 0.67 0.815901
Target:  5'- cCUCCCGCCUCGGggUCCucuGGggaCCGGa -3'
miRNA:   3'- -GGGGGCGGAGUCgaAGG---CUagcGGCC- -5'
9359 3' -60.2 NC_002512.2 + 98113 0.68 0.74737
Target:  5'- uUCCCGCC-CcGCUUgCCGGggCGCUGGu -3'
miRNA:   3'- gGGGGCGGaGuCGAA-GGCUa-GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 100043 0.71 0.568922
Target:  5'- gCCUCCGCCUCcGCcUCC-AUCGCgaCGGg -3'
miRNA:   3'- -GGGGGCGGAGuCGaAGGcUAGCG--GCC- -5'
9359 3' -60.2 NC_002512.2 + 101218 0.73 0.469012
Target:  5'- gCCCCGUCcgcCGGgUUCCGG-CGCCGGc -3'
miRNA:   3'- gGGGGCGGa--GUCgAAGGCUaGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 103789 0.67 0.807768
Target:  5'- aCCgCCGaCCUCGGUgaucacgUCCGAguUC-CCGGa -3'
miRNA:   3'- -GGgGGC-GGAGUCGa------AGGCU--AGcGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.