miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9359 3' -60.2 NC_002512.2 + 195544 0.83 0.122413
Target:  5'- uCCUCCGCCcgcUCAGCUcCCgGGUCGCCGGg -3'
miRNA:   3'- -GGGGGCGG---AGUCGAaGG-CUAGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 108110 0.77 0.301093
Target:  5'- gUCCCCGCCUCGGCggUCCGcgGUC-CCGa -3'
miRNA:   3'- -GGGGGCGGAGUCGa-AGGC--UAGcGGCc -5'
9359 3' -60.2 NC_002512.2 + 115850 0.77 0.307626
Target:  5'- gCCCCUGCCUCgaGGCguucgCCGAggcgggccCGCCGGa -3'
miRNA:   3'- -GGGGGCGGAG--UCGaa---GGCUa-------GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 188789 0.76 0.334835
Target:  5'- gCUCCgGCCUCGGCggccCCGAUCGCggCGGc -3'
miRNA:   3'- -GGGGgCGGAGUCGaa--GGCUAGCG--GCC- -5'
9359 3' -60.2 NC_002512.2 + 218211 0.75 0.370506
Target:  5'- gCCCCCGCCUCgggccgcGGCgggCCGcggCGCCGa -3'
miRNA:   3'- -GGGGGCGGAG-------UCGaa-GGCua-GCGGCc -5'
9359 3' -60.2 NC_002512.2 + 109111 0.74 0.43491
Target:  5'- gCCCCCGCCgaCGGCcgCCGAguccagcaCGUCGGa -3'
miRNA:   3'- -GGGGGCGGa-GUCGaaGGCUa-------GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 208094 0.74 0.43491
Target:  5'- uUCCCGCCUCGGCUcCCGGUuauauauaaaaCGCCu- -3'
miRNA:   3'- gGGGGCGGAGUCGAaGGCUA-----------GCGGcc -5'
9359 3' -60.2 NC_002512.2 + 111761 0.74 0.43491
Target:  5'- gCCCCCGCCcccuccccgUCAGCgauacggCCGGUcCGCgCGGu -3'
miRNA:   3'- -GGGGGCGG---------AGUCGaa-----GGCUA-GCG-GCC- -5'
9359 3' -60.2 NC_002512.2 + 101218 0.73 0.469012
Target:  5'- gCCCCGUCcgcCGGgUUCCGG-CGCCGGc -3'
miRNA:   3'- gGGGGCGGa--GUCgAAGGCUaGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 107877 0.73 0.469012
Target:  5'- uCCgCCGCCUcCGGCcccUCCGggCGCCGa -3'
miRNA:   3'- -GGgGGCGGA-GUCGa--AGGCuaGCGGCc -5'
9359 3' -60.2 NC_002512.2 + 170654 0.73 0.469012
Target:  5'- gCCUCGCCUgCGGUUUCC--UCGUCGGg -3'
miRNA:   3'- gGGGGCGGA-GUCGAAGGcuAGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 128399 0.73 0.469012
Target:  5'- aCCCCGUCUCgAGC--CCGGuggcggggUCGCCGGa -3'
miRNA:   3'- gGGGGCGGAG-UCGaaGGCU--------AGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 219528 0.73 0.494571
Target:  5'- aCCCCCGUCuucgUCGGCgugcccaCCGGacggucuUCGCCGGg -3'
miRNA:   3'- -GGGGGCGG----AGUCGaa-----GGCU-------AGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 207823 0.73 0.495464
Target:  5'- aCCCCGaCUCGGCgucucCCGAUC-CCGGc -3'
miRNA:   3'- gGGGGCgGAGUCGaa---GGCUAGcGGCC- -5'
9359 3' -60.2 NC_002512.2 + 147911 0.72 0.51075
Target:  5'- gCCCCCGCCgCcaccacccgcccggGGCUcaCCGcgCGCCGGc -3'
miRNA:   3'- -GGGGGCGGaG--------------UCGAa-GGCuaGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 107823 0.72 0.531736
Target:  5'- gCCCCCGCUgucgucaCAGCcgCCGA-CGCCGc -3'
miRNA:   3'- -GGGGGCGGa------GUCGaaGGCUaGCGGCc -5'
9359 3' -60.2 NC_002512.2 + 184629 0.72 0.540958
Target:  5'- gCCCCCGCCggcggccgaCGGCgagUCCGcgggCGCCGc -3'
miRNA:   3'- -GGGGGCGGa--------GUCGa--AGGCua--GCGGCc -5'
9359 3' -60.2 NC_002512.2 + 184427 0.72 0.540958
Target:  5'- uCCgUCGCCUCGGCcgCCGccggCGUCGGa -3'
miRNA:   3'- -GGgGGCGGAGUCGaaGGCua--GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 100043 0.71 0.568922
Target:  5'- gCCUCCGCCUCcGCcUCC-AUCGCgaCGGg -3'
miRNA:   3'- -GGGGGCGGAGuCGaAGGcUAGCG--GCC- -5'
9359 3' -60.2 NC_002512.2 + 145914 0.71 0.578327
Target:  5'- gCCCCgCGCCg-GGCaUCCGc-CGCCGGg -3'
miRNA:   3'- -GGGG-GCGGagUCGaAGGCuaGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.