miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9359 5' -54 NC_002512.2 + 102505 0.69 0.929063
Target:  5'- --gCGgcGGACGG-GGAGGacGAGGAGGa -3'
miRNA:   3'- cagGCuuCUUGCCuCCUCC--CUCUUCC- -5'
9359 5' -54 NC_002512.2 + 205291 0.69 0.928552
Target:  5'- uUCCGAcccAGcgguccccgcgucGACGGAccgGGAGGGAGgGAGGa -3'
miRNA:   3'- cAGGCU---UC-------------UUGCCU---CCUCCCUC-UUCC- -5'
9359 5' -54 NC_002512.2 + 223091 0.7 0.923316
Target:  5'- gGUCCGcGGcugcgucGACGG-GGAGGGGGAuccgcGGGu -3'
miRNA:   3'- -CAGGCuUC-------UUGCCuCCUCCCUCU-----UCC- -5'
9359 5' -54 NC_002512.2 + 228920 0.7 0.918409
Target:  5'- ---aGAGGAGCGGAGaGAGaaGGAgGAAGGg -3'
miRNA:   3'- caggCUUCUUGCCUC-CUC--CCU-CUUCC- -5'
9359 5' -54 NC_002512.2 + 39437 0.7 0.918409
Target:  5'- -aCCau-GAACGGAGGAGGGAacguGGa -3'
miRNA:   3'- caGGcuuCUUGCCUCCUCCCUcuu-CC- -5'
9359 5' -54 NC_002512.2 + 148462 0.7 0.917853
Target:  5'- -cCCGcGGGACGGAgccgcgacggcggGGAGGacGAGAAGGc -3'
miRNA:   3'- caGGCuUCUUGCCU-------------CCUCC--CUCUUCC- -5'
9359 5' -54 NC_002512.2 + 149357 0.7 0.912741
Target:  5'- ---nGAGGAcgACGGGGGAGaGGAcGAGGGc -3'
miRNA:   3'- caggCUUCU--UGCCUCCUC-CCU-CUUCC- -5'
9359 5' -54 NC_002512.2 + 123028 0.7 0.906847
Target:  5'- ---nGAGGAGgaGGAGGAGgaGGAGGAGGa -3'
miRNA:   3'- caggCUUCUUg-CCUCCUC--CCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 227951 0.7 0.900729
Target:  5'- -gCgGggGAgcGCGGGGGAgccGGaGAGGAGGg -3'
miRNA:   3'- caGgCuuCU--UGCCUCCU---CC-CUCUUCC- -5'
9359 5' -54 NC_002512.2 + 90528 0.7 0.89439
Target:  5'- --aCGAcgGGAACGcGGuGGGGGAGGAGGa -3'
miRNA:   3'- cagGCU--UCUUGCcUC-CUCCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 149330 0.71 0.887832
Target:  5'- -gCCGGAGGGagaagaGGAGGAGGaGGAAGa -3'
miRNA:   3'- caGGCUUCUUg-----CCUCCUCCcUCUUCc -5'
9359 5' -54 NC_002512.2 + 127082 0.71 0.887164
Target:  5'- -cCCGuucccGGAGCGGAGGGcggcggcggcggcGGGAGAuGGg -3'
miRNA:   3'- caGGCu----UCUUGCCUCCU-------------CCCUCUuCC- -5'
9359 5' -54 NC_002512.2 + 166553 0.71 0.881058
Target:  5'- -cCCGAGGGAgGGGauGaGGGGGAGAacGGGg -3'
miRNA:   3'- caGGCUUCUUgCCU--C-CUCCCUCU--UCC- -5'
9359 5' -54 NC_002512.2 + 108988 0.71 0.874074
Target:  5'- -aCUGAAGAagcgggcgACGGAGGAgaGGGAccucGAGGGg -3'
miRNA:   3'- caGGCUUCU--------UGCCUCCU--CCCU----CUUCC- -5'
9359 5' -54 NC_002512.2 + 97817 0.71 0.874074
Target:  5'- cUCCGggGAcGCGGAGuaGAGGGcggcgcGggGGa -3'
miRNA:   3'- cAGGCuuCU-UGCCUC--CUCCCu-----CuuCC- -5'
9359 5' -54 NC_002512.2 + 93756 0.71 0.866883
Target:  5'- --aCGGAGGGCucGGAgGGAGGGAGgGAGGu -3'
miRNA:   3'- cagGCUUCUUG--CCU-CCUCCCUC-UUCC- -5'
9359 5' -54 NC_002512.2 + 156454 0.71 0.859492
Target:  5'- cUCCGggGGcgGCGGGGGAcucGGGGGcggcGGGc -3'
miRNA:   3'- cAGGCuuCU--UGCCUCCU---CCCUCu---UCC- -5'
9359 5' -54 NC_002512.2 + 219933 0.72 0.844126
Target:  5'- cUCCGucGAcgcGCGGGGGAGGGuGGAu- -3'
miRNA:   3'- cAGGCuuCU---UGCCUCCUCCCuCUUcc -5'
9359 5' -54 NC_002512.2 + 199814 0.72 0.844126
Target:  5'- -aCCGcGGGGGCGGAucggguGGAGGGGGGgcGGGa -3'
miRNA:   3'- caGGC-UUCUUGCCU------CCUCCCUCU--UCC- -5'
9359 5' -54 NC_002512.2 + 178 0.72 0.841757
Target:  5'- -gCCGGgaGGGACGGGGGcgagaaggggcccgGGcGGAGAGGGa -3'
miRNA:   3'- caGGCU--UCUUGCCUCC--------------UC-CCUCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.