miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9359 5' -54 NC_002512.2 + 227527 0.85 0.236714
Target:  5'- aGUCCGgcG-GCGGAcGGGGGGAGGAGGg -3'
miRNA:   3'- -CAGGCuuCuUGCCU-CCUCCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 104618 0.84 0.254021
Target:  5'- -aCCGggGAggggACGGGGGAGaGGGGGAGGg -3'
miRNA:   3'- caGGCuuCU----UGCCUCCUC-CCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 228490 0.83 0.298432
Target:  5'- -aCCGAAGAcGCGGAGGGGcGAGAGGGa -3'
miRNA:   3'- caGGCUUCU-UGCCUCCUCcCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 228404 0.82 0.35627
Target:  5'- uGUCCGggGGACGGGgcgcuGGGGGGcGggGGc -3'
miRNA:   3'- -CAGGCuuCUUGCCU-----CCUCCCuCuuCC- -5'
9359 5' -54 NC_002512.2 + 153568 0.81 0.388008
Target:  5'- uGUCUggggggGAAGGACGGGGGGGGGguAGggGGg -3'
miRNA:   3'- -CAGG------CUUCUUGCCUCCUCCC--UCuuCC- -5'
9359 5' -54 NC_002512.2 + 123002 0.8 0.421549
Target:  5'- -gCCGAAGGAgaGGAGGAGgaGGAGGAGGa -3'
miRNA:   3'- caGGCUUCUUg-CCUCCUC--CCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 95697 0.79 0.484207
Target:  5'- cUCCGGcgGGGACGGGGGGccGGGAGggGa -3'
miRNA:   3'- cAGGCU--UCUUGCCUCCU--CCCUCuuCc -5'
9359 5' -54 NC_002512.2 + 129279 0.79 0.493526
Target:  5'- -aCCG-GGAcUGGGGGGGGGGGGAGGg -3'
miRNA:   3'- caGGCuUCUuGCCUCCUCCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 226248 0.78 0.541251
Target:  5'- -gCCGGAGGA-GGAGGAGGaGAGGAGa -3'
miRNA:   3'- caGGCUUCUUgCCUCCUCC-CUCUUCc -5'
9359 5' -54 NC_002512.2 + 199655 0.77 0.560783
Target:  5'- -cCCGc-GGACGGAGGAGGGGGAGa- -3'
miRNA:   3'- caGGCuuCUUGCCUCCUCCCUCUUcc -5'
9359 5' -54 NC_002512.2 + 229301 0.77 0.570623
Target:  5'- uGUUCGGAGAggagGCaGGAGGAGgaaGGAGAGGGa -3'
miRNA:   3'- -CAGGCUUCU----UG-CCUCCUC---CCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 228963 0.77 0.600365
Target:  5'- ---aGAGGGGCGGAGGGcGGGAGAcGGa -3'
miRNA:   3'- caggCUUCUUGCCUCCU-CCCUCUuCC- -5'
9359 5' -54 NC_002512.2 + 150047 0.77 0.600365
Target:  5'- -gCCGggGAcgACGG-GGcGGGAGggGGg -3'
miRNA:   3'- caGGCuuCU--UGCCuCCuCCCUCuuCC- -5'
9359 5' -54 NC_002512.2 + 223836 0.76 0.620315
Target:  5'- cGUCgGAGGGgaaGGAGGAGGccGAGGAGGa -3'
miRNA:   3'- -CAGgCUUCUug-CCUCCUCC--CUCUUCC- -5'
9359 5' -54 NC_002512.2 + 200358 0.76 0.630307
Target:  5'- -aCgGggGGACGGGGcGGGGGGuGAGGGg -3'
miRNA:   3'- caGgCuuCUUGCCUC-CUCCCU-CUUCC- -5'
9359 5' -54 NC_002512.2 + 223868 0.75 0.670212
Target:  5'- -gCCGAGGAGgaggccgaGGAGGAGGccGAGGAGGa -3'
miRNA:   3'- caGGCUUCUUg-------CCUCCUCC--CUCUUCC- -5'
9359 5' -54 NC_002512.2 + 100080 0.75 0.699857
Target:  5'- -gCCGggGAcggaGCGGucagGGGAacaGGGAGAAGGg -3'
miRNA:   3'- caGGCuuCU----UGCC----UCCU---CCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 96601 0.74 0.723232
Target:  5'- cUCUGggGAccggagcgcggagacGCGGGGGAGGGcGAGGa -3'
miRNA:   3'- cAGGCuuCU---------------UGCCUCCUCCCuCUUCc -5'
9359 5' -54 NC_002512.2 + 201762 0.74 0.729013
Target:  5'- -cCCGggGGACG--GGAGGGAcGAGGGu -3'
miRNA:   3'- caGGCuuCUUGCcuCCUCCCU-CUUCC- -5'
9359 5' -54 NC_002512.2 + 200405 0.74 0.738584
Target:  5'- -gCCGGgagGGAgcagACGGAGGAGgacgaGGAGAAGGg -3'
miRNA:   3'- caGGCU---UCU----UGCCUCCUC-----CCUCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.