miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9359 5' -54 NC_002512.2 + 54 0.73 0.76673
Target:  5'- -gCgGGAuGAGCgGGAGGAGGG-GAAGGg -3'
miRNA:   3'- caGgCUU-CUUG-CCUCCUCCCuCUUCC- -5'
9359 5' -54 NC_002512.2 + 178 0.72 0.841757
Target:  5'- -gCCGGgaGGGACGGGGGcgagaaggggcccgGGcGGAGAGGGa -3'
miRNA:   3'- caGGCU--UCUUGCCUCC--------------UC-CCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 227 0.67 0.968941
Target:  5'- -aCCGAAGGGCaGGcGGGcGGGAaAAGGg -3'
miRNA:   3'- caGGCUUCUUG-CCuCCU-CCCUcUUCC- -5'
9359 5' -54 NC_002512.2 + 39437 0.7 0.918409
Target:  5'- -aCCau-GAACGGAGGAGGGAacguGGa -3'
miRNA:   3'- caGGcuuCUUGCCUCCUCCCUcuu-CC- -5'
9359 5' -54 NC_002512.2 + 40806 0.66 0.987983
Target:  5'- -gCCGAAGAAUGGGucguucuGGGGGGAaucGGu -3'
miRNA:   3'- caGGCUUCUUGCCU-------CCUCCCUcuuCC- -5'
9359 5' -54 NC_002512.2 + 41266 0.67 0.970097
Target:  5'- -aCCGAAGAAcgaauCGGAGcAGGGAuauggcguccuugcgGAAGGa -3'
miRNA:   3'- caGGCUUCUU-----GCCUCcUCCCU---------------CUUCC- -5'
9359 5' -54 NC_002512.2 + 75685 0.72 0.819719
Target:  5'- --aCGAcGAugGGGGGuGGGGGAAGa -3'
miRNA:   3'- cagGCUuCUugCCUCCuCCCUCUUCc -5'
9359 5' -54 NC_002512.2 + 75780 0.68 0.951729
Target:  5'- -cCCGGgaggacggggcAGAGCGGGGGAGcGGuaAGAAGa -3'
miRNA:   3'- caGGCU-----------UCUUGCCUCCUC-CC--UCUUCc -5'
9359 5' -54 NC_002512.2 + 77001 0.74 0.754646
Target:  5'- -gCCGAAGGAgGGAGGgugaacggacggcgAGGG-GAAGGa -3'
miRNA:   3'- caGGCUUCUUgCCUCC--------------UCCCuCUUCC- -5'
9359 5' -54 NC_002512.2 + 82597 0.66 0.986629
Target:  5'- aUCUG-GGAuauuagucucuACGGGGGAGGGGGuAAGu -3'
miRNA:   3'- cAGGCuUCU-----------UGCCUCCUCCCUC-UUCc -5'
9359 5' -54 NC_002512.2 + 90528 0.7 0.89439
Target:  5'- --aCGAcgGGAACGcGGuGGGGGAGGAGGa -3'
miRNA:   3'- cagGCU--UCUUGCcUC-CUCCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 93756 0.71 0.866883
Target:  5'- --aCGGAGGGCucGGAgGGAGGGAGgGAGGu -3'
miRNA:   3'- cagGCUUCUUG--CCU-CCUCCCUC-UUCC- -5'
9359 5' -54 NC_002512.2 + 95697 0.79 0.484207
Target:  5'- cUCCGGcgGGGACGGGGGGccGGGAGggGa -3'
miRNA:   3'- cAGGCU--UCUUGCCUCCU--CCCUCuuCc -5'
9359 5' -54 NC_002512.2 + 96601 0.74 0.723232
Target:  5'- cUCUGggGAccggagcgcggagacGCGGGGGAGGGcGAGGa -3'
miRNA:   3'- cAGGCuuCU---------------UGCCUCCUCCCuCUUCc -5'
9359 5' -54 NC_002512.2 + 97817 0.71 0.874074
Target:  5'- cUCCGggGAcGCGGAGuaGAGGGcggcgcGggGGa -3'
miRNA:   3'- cAGGCuuCU-UGCCUC--CUCCCu-----CuuCC- -5'
9359 5' -54 NC_002512.2 + 100080 0.75 0.699857
Target:  5'- -gCCGggGAcggaGCGGucagGGGAacaGGGAGAAGGg -3'
miRNA:   3'- caGGCuuCU----UGCC----UCCU---CCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 102505 0.69 0.929063
Target:  5'- --gCGgcGGACGG-GGAGGacGAGGAGGa -3'
miRNA:   3'- cagGCuuCUUGCCuCCUCC--CUCUUCC- -5'
9359 5' -54 NC_002512.2 + 103684 0.68 0.955594
Target:  5'- cGUCgcaGAGGGcgGCGGAcgcGGcGGGAGggGGc -3'
miRNA:   3'- -CAGg--CUUCU--UGCCU---CCuCCCUCuuCC- -5'
9359 5' -54 NC_002512.2 + 104618 0.84 0.254021
Target:  5'- -aCCGggGAggggACGGGGGAGaGGGGGAGGg -3'
miRNA:   3'- caGGCuuCU----UGCCUCCUC-CCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 108988 0.71 0.874074
Target:  5'- -aCUGAAGAagcgggcgACGGAGGAgaGGGAccucGAGGGg -3'
miRNA:   3'- caGGCUUCU--------UGCCUCCU--CCCU----CUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.