miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9360 5' -55.6 NC_002512.2 + 195131 0.79 0.320051
Target:  5'- -cGGGGGAGaGGCGGU-GUCGCGACAGc -3'
miRNA:   3'- uaUCUCCUC-CCGUCGuCAGCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 113265 0.77 0.398807
Target:  5'- --cGAGGGGGGCggccggcggGGCAGcCGCGGCGGg -3'
miRNA:   3'- uauCUCCUCCCG---------UCGUCaGCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 114047 0.75 0.51682
Target:  5'- cGUAGAGGGcGGGCccggaacAGCGGUaggCGCAGCGGg -3'
miRNA:   3'- -UAUCUCCU-CCCG-------UCGUCA---GCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 127092 0.75 0.527571
Target:  5'- -gAGcGGAGGGCGGCGG-CgGCGGCGGg -3'
miRNA:   3'- uaUCuCCUCCCGUCGUCaG-CGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 102467 0.75 0.534456
Target:  5'- -cGGAGGAGGGCgcgcccgucgcgguGGCGGUCccgcagGCGGCGGa -3'
miRNA:   3'- uaUCUCCUCCCG--------------UCGUCAG------CGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 92591 0.75 0.537417
Target:  5'- -gGGAGGGGcGGCGGUcccgaggccGGUCGCGACGa -3'
miRNA:   3'- uaUCUCCUC-CCGUCG---------UCAGCGUUGUc -5'
9360 5' -55.6 NC_002512.2 + 107732 0.74 0.547324
Target:  5'- -cAGAGGuGGGU-GCGGUgGCAGCGGa -3'
miRNA:   3'- uaUCUCCuCCCGuCGUCAgCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 191285 0.74 0.567305
Target:  5'- --cGGGGAGGGCGGCGGg-GCGGgGGa -3'
miRNA:   3'- uauCUCCUCCCGUCGUCagCGUUgUC- -5'
9360 5' -55.6 NC_002512.2 + 228106 0.73 0.597599
Target:  5'- --cGAGGAGGGCGuCGGcCGCAACGu -3'
miRNA:   3'- uauCUCCUCCCGUcGUCaGCGUUGUc -5'
9360 5' -55.6 NC_002512.2 + 103690 0.72 0.658662
Target:  5'- -----aGAGGGCGGCGGaCGCGGCGGg -3'
miRNA:   3'- uaucucCUCCCGUCGUCaGCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 123048 0.71 0.728789
Target:  5'- -aGGAGGAGgcgauGGCGGaagaggaGGUCGCGGCGGc -3'
miRNA:   3'- uaUCUCCUC-----CCGUCg------UCAGCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 227616 0.71 0.738548
Target:  5'- -cGGAGGGcGGGCGGCggcggcgaGGUCagGCGACGGa -3'
miRNA:   3'- uaUCUCCU-CCCGUCG--------UCAG--CGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 170809 0.71 0.747253
Target:  5'- -gAGGGGAgcgacggGGGCGGCAG-CGgCGGCAGc -3'
miRNA:   3'- uaUCUCCU-------CCCGUCGUCaGC-GUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 192094 0.7 0.766297
Target:  5'- -cAGAGcGAGGGCGGC-GUCauguuccacgggaGCGACAGc -3'
miRNA:   3'- uaUCUC-CUCCCGUCGuCAG-------------CGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 205392 0.7 0.767237
Target:  5'- ---cAGGAaGGCGGCGG-CGCAGCGGa -3'
miRNA:   3'- uaucUCCUcCCGUCGUCaGCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 150673 0.7 0.776574
Target:  5'- --cGAGGuccgcGGGcGCGGCGGUCGCcccGACGGa -3'
miRNA:   3'- uauCUCC-----UCC-CGUCGUCAGCG---UUGUC- -5'
9360 5' -55.6 NC_002512.2 + 228966 0.69 0.821164
Target:  5'- -gGGGcGGAGGGCGGgAGaCGgAGCAGa -3'
miRNA:   3'- uaUCU-CCUCCCGUCgUCaGCgUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 166216 0.69 0.821164
Target:  5'- --cGAGGAGGGCcGCGcgCGCGugGGg -3'
miRNA:   3'- uauCUCCUCCCGuCGUcaGCGUugUC- -5'
9360 5' -55.6 NC_002512.2 + 130786 0.69 0.829603
Target:  5'- --cGAGGAGGGCcGCcGacgCGCAGCAc -3'
miRNA:   3'- uauCUCCUCCCGuCGuCa--GCGUUGUc -5'
9360 5' -55.6 NC_002512.2 + 227545 0.69 0.835405
Target:  5'- -gGGAGGAGGGCggguccgcgaccgaGGCcuccggaccgccGG-CGCAGCAGa -3'
miRNA:   3'- uaUCUCCUCCCG--------------UCG------------UCaGCGUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.