miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9360 5' -55.6 NC_002512.2 + 92591 0.75 0.537417
Target:  5'- -gGGAGGGGcGGCGGUcccgaggccGGUCGCGACGa -3'
miRNA:   3'- uaUCUCCUC-CCGUCG---------UCAGCGUUGUc -5'
9360 5' -55.6 NC_002512.2 + 96211 0.67 0.926309
Target:  5'- --cGAGGucGGCcacGGCGGcCGCGGCGGc -3'
miRNA:   3'- uauCUCCucCCG---UCGUCaGCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 97831 0.66 0.954011
Target:  5'- aGUAGAGGgcggcgcgGGGGaAGCGGagGCGACGa -3'
miRNA:   3'- -UAUCUCC--------UCCCgUCGUCagCGUUGUc -5'
9360 5' -55.6 NC_002512.2 + 102467 0.75 0.534456
Target:  5'- -cGGAGGAGGGCgcgcccgucgcgguGGCGGUCccgcagGCGGCGGa -3'
miRNA:   3'- uaUCUCCUCCCG--------------UCGUCAG------CGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 103690 0.72 0.658662
Target:  5'- -----aGAGGGCGGCGGaCGCGGCGGg -3'
miRNA:   3'- uaucucCUCCCGUCGUCaGCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 104639 0.68 0.882616
Target:  5'- -aGGGGGAGGGCGGCgcgaacgAGggCGCGAa-- -3'
miRNA:   3'- uaUCUCCUCCCGUCG-------UCa-GCGUUguc -5'
9360 5' -55.6 NC_002512.2 + 105654 0.67 0.920867
Target:  5'- --cGAGGuAGGGCG--AGcCGCAGCAGa -3'
miRNA:   3'- uauCUCC-UCCCGUcgUCaGCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 107732 0.74 0.547324
Target:  5'- -cAGAGGuGGGU-GCGGUgGCAGCGGa -3'
miRNA:   3'- uaUCUCCuCCCGuCGUCAgCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 113265 0.77 0.398807
Target:  5'- --cGAGGGGGGCggccggcggGGCAGcCGCGGCGGg -3'
miRNA:   3'- uauCUCCUCCCG---------UCGUCaGCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 114047 0.75 0.51682
Target:  5'- cGUAGAGGGcGGGCccggaacAGCGGUaggCGCAGCGGg -3'
miRNA:   3'- -UAUCUCCU-CCCG-------UCGUCA---GCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 119098 0.66 0.94571
Target:  5'- -aGGAGGugcGGGCGGCcucGG-CGCAGCu- -3'
miRNA:   3'- uaUCUCCu--CCCGUCG---UCaGCGUUGuc -5'
9360 5' -55.6 NC_002512.2 + 121382 0.68 0.890143
Target:  5'- -gAGAGGAGGGCGaCGGcCG-GACGGa -3'
miRNA:   3'- uaUCUCCUCCCGUcGUCaGCgUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 123048 0.71 0.728789
Target:  5'- -aGGAGGAGgcgauGGCGGaagaggaGGUCGCGGCGGc -3'
miRNA:   3'- uaUCUCCUC-----CCGUCg------UCAGCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 127092 0.75 0.527571
Target:  5'- -gAGcGGAGGGCGGCGG-CgGCGGCGGg -3'
miRNA:   3'- uaUCuCCUCCCGUCGUCaG-CGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 128814 0.67 0.903129
Target:  5'- -gAGAGGucGGCGGCGG-CGCuguCGGc -3'
miRNA:   3'- uaUCUCCucCCGUCGUCaGCGuu-GUC- -5'
9360 5' -55.6 NC_002512.2 + 129294 0.68 0.86899
Target:  5'- -gGGGGGAGGGagcaCGGCGGagGgAACGGg -3'
miRNA:   3'- uaUCUCCUCCC----GUCGUCagCgUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 130786 0.69 0.829603
Target:  5'- --cGAGGAGGGCcGCcGacgCGCAGCAc -3'
miRNA:   3'- uauCUCCUCCCGuCGuCa--GCGUUGUc -5'
9360 5' -55.6 NC_002512.2 + 144079 0.68 0.890143
Target:  5'- uGUAGAc--GGGCAGCAGgCGCAAUAa -3'
miRNA:   3'- -UAUCUccuCCCGUCGUCaGCGUUGUc -5'
9360 5' -55.6 NC_002512.2 + 146718 0.66 0.936481
Target:  5'- --cGAcGGcGGGGCGGCGGcCGCGGCc- -3'
miRNA:   3'- uauCU-CC-UCCCGUCGUCaGCGUUGuc -5'
9360 5' -55.6 NC_002512.2 + 150311 0.66 0.94075
Target:  5'- -cGGAGGAGcgagaccGGCGGCgAGgacgcCGCGGCGGu -3'
miRNA:   3'- uaUCUCCUC-------CCGUCG-UCa----GCGUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.