Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 217485 | 0.71 | 0.756985 |
Target: 5'- cGCGAUCCC-GG-CGccgccgccgccgCCCGAAGGCGa -3' miRNA: 3'- cCGCUAGGGaCCaGCa-----------GGGCUUUCGC- -5' |
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9361 | 5' | -56.4 | NC_002512.2 | + | 126512 | 0.73 | 0.683128 |
Target: 5'- cGCGAgCCuCUGGUCGgacgaCCCGAccGCGg -3' miRNA: 3'- cCGCUaGG-GACCAGCa----GGGCUuuCGC- -5' |
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9361 | 5' | -56.4 | NC_002512.2 | + | 152957 | 0.73 | 0.67341 |
Target: 5'- aGCGGUCCCcGGUCGggucggCGGGAGCGg -3' miRNA: 3'- cCGCUAGGGaCCAGCagg---GCUUUCGC- -5' |
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9361 | 5' | -56.4 | NC_002512.2 | + | 153007 | 0.73 | 0.67341 |
Target: 5'- aGCGGUCCCcGGUCGggucggCGGGAGCGg -3' miRNA: 3'- cCGCUAGGGaCCAGCagg---GCUUUCGC- -5' |
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9361 | 5' | -56.4 | NC_002512.2 | + | 153142 | 0.74 | 0.604934 |
Target: 5'- gGGCGAUCCg-GGUCGcggUCCGGAaaGGCGa -3' miRNA: 3'- -CCGCUAGGgaCCAGCa--GGGCUU--UCGC- -5' |
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9361 | 5' | -56.4 | NC_002512.2 | + | 135665 | 0.75 | 0.556432 |
Target: 5'- uGGUGAUCC-UGGUCGUCCuCGuGGGGCu -3' miRNA: 3'- -CCGCUAGGgACCAGCAGG-GC-UUUCGc -5' |
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9361 | 5' | -56.4 | NC_002512.2 | + | 141934 | 0.75 | 0.546853 |
Target: 5'- cGGCG-UCaccaaCUGGUCGUCCaUGAGAGUGa -3' miRNA: 3'- -CCGCuAGg----GACCAGCAGG-GCUUUCGC- -5' |
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9361 | 5' | -56.4 | NC_002512.2 | + | 152909 | 0.77 | 0.463572 |
Target: 5'- aGCGGUCCCcGGUCgGUCagCGGGAGCGg -3' miRNA: 3'- cCGCUAGGGaCCAG-CAGg-GCUUUCGC- -5' |
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9361 | 5' | -56.4 | NC_002512.2 | + | 202563 | 0.8 | 0.322767 |
Target: 5'- cGGCGGaucuccugcgacagaUCCCUGGUC-UCuCCGAGAGCGu -3' miRNA: 3'- -CCGCU---------------AGGGACCAGcAG-GGCUUUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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