miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9361 5' -56.4 NC_002512.2 + 202563 0.8 0.322767
Target:  5'- cGGCGGaucuccugcgacagaUCCCUGGUC-UCuCCGAGAGCGu -3'
miRNA:   3'- -CCGCU---------------AGGGACCAGcAG-GGCUUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 152909 0.77 0.463572
Target:  5'- aGCGGUCCCcGGUCgGUCagCGGGAGCGg -3'
miRNA:   3'- cCGCUAGGGaCCAG-CAGg-GCUUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 141934 0.75 0.546853
Target:  5'- cGGCG-UCaccaaCUGGUCGUCCaUGAGAGUGa -3'
miRNA:   3'- -CCGCuAGg----GACCAGCAGG-GCUUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 135665 0.75 0.556432
Target:  5'- uGGUGAUCC-UGGUCGUCCuCGuGGGGCu -3'
miRNA:   3'- -CCGCUAGGgACCAGCAGG-GC-UUUCGc -5'
9361 5' -56.4 NC_002512.2 + 153142 0.74 0.604934
Target:  5'- gGGCGAUCCg-GGUCGcggUCCGGAaaGGCGa -3'
miRNA:   3'- -CCGCUAGGgaCCAGCa--GGGCUU--UCGC- -5'
9361 5' -56.4 NC_002512.2 + 153007 0.73 0.67341
Target:  5'- aGCGGUCCCcGGUCGggucggCGGGAGCGg -3'
miRNA:   3'- cCGCUAGGGaCCAGCagg---GCUUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 152957 0.73 0.67341
Target:  5'- aGCGGUCCCcGGUCGggucggCGGGAGCGg -3'
miRNA:   3'- cCGCUAGGGaCCAGCagg---GCUUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 126512 0.73 0.683128
Target:  5'- cGCGAgCCuCUGGUCGgacgaCCCGAccGCGg -3'
miRNA:   3'- cCGCUaGG-GACCAGCa----GGGCUuuCGC- -5'
9361 5' -56.4 NC_002512.2 + 217485 0.71 0.756985
Target:  5'- cGCGAUCCC-GG-CGccgccgccgccgCCCGAAGGCGa -3'
miRNA:   3'- cCGCUAGGGaCCaGCa-----------GGGCUUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 184758 0.71 0.758815
Target:  5'- cGGCGGgcggCCCgUGGUCGUcgacCCCGAGGacGUGg -3'
miRNA:   3'- -CCGCUa---GGG-ACCAGCA----GGGCUUU--CGC- -5'
9361 5' -56.4 NC_002512.2 + 215155 0.71 0.776871
Target:  5'- aGGCGAcgagCaCCUGGcCGUCCUgcugcucgGGGAGCGg -3'
miRNA:   3'- -CCGCUa---G-GGACCaGCAGGG--------CUUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 157112 0.7 0.803045
Target:  5'- cGGCGAcgUCCCUcccggcgucgggGGUCGgcggcgggCCCGGggcGGGCGg -3'
miRNA:   3'- -CCGCU--AGGGA------------CCAGCa-------GGGCU---UUCGC- -5'
9361 5' -56.4 NC_002512.2 + 92832 0.7 0.811497
Target:  5'- cGGCGccuccUCCCUGGcCGUCcCCGGucGGCc -3'
miRNA:   3'- -CCGCu----AGGGACCaGCAG-GGCUu-UCGc -5'
9361 5' -56.4 NC_002512.2 + 169017 0.7 0.827945
Target:  5'- cGGCGAUCCgggcgGG-CGUCCgCGAGcGGCGc -3'
miRNA:   3'- -CCGCUAGGga---CCaGCAGG-GCUU-UCGC- -5'
9361 5' -56.4 NC_002512.2 + 102474 0.7 0.835927
Target:  5'- gGGCGcgCCCgucgcGGUggcgGUCCCGcAGGCGg -3'
miRNA:   3'- -CCGCuaGGGa----CCAg---CAGGGCuUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 223944 0.7 0.835927
Target:  5'- aGGuCGAUCCCUGGggacgGUUCCGGc-GCGa -3'
miRNA:   3'- -CC-GCUAGGGACCag---CAGGGCUuuCGC- -5'
9361 5' -56.4 NC_002512.2 + 200730 0.69 0.858831
Target:  5'- cGGCGGUCCgaacgGGUCGUaCCGGgcGUGg -3'
miRNA:   3'- -CCGCUAGGga---CCAGCAgGGCUuuCGC- -5'
9361 5' -56.4 NC_002512.2 + 132428 0.69 0.858831
Target:  5'- cGGCGAUCCagaaccGGUUGcgcucCCCGgcGGCGg -3'
miRNA:   3'- -CCGCUAGGga----CCAGCa----GGGCuuUCGC- -5'
9361 5' -56.4 NC_002512.2 + 207656 0.68 0.886721
Target:  5'- cGGCGG-CCgUGGUggCGUCCCG--GGCu -3'
miRNA:   3'- -CCGCUaGGgACCA--GCAGGGCuuUCGc -5'
9361 5' -56.4 NC_002512.2 + 186835 0.68 0.893188
Target:  5'- cGGCGAggCCCUGcG-CGUCgCCGAGGaccuGCGc -3'
miRNA:   3'- -CCGCUa-GGGAC-CaGCAG-GGCUUU----CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.