miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9361 5' -56.4 NC_002512.2 + 92832 0.7 0.811497
Target:  5'- cGGCGccuccUCCCUGGcCGUCcCCGGucGGCc -3'
miRNA:   3'- -CCGCu----AGGGACCaGCAG-GGCUu-UCGc -5'
9361 5' -56.4 NC_002512.2 + 101306 0.66 0.953997
Target:  5'- cGGCc-UCUCgcagGGUCGgccCCCGGAGGCc -3'
miRNA:   3'- -CCGcuAGGGa---CCAGCa--GGGCUUUCGc -5'
9361 5' -56.4 NC_002512.2 + 102474 0.7 0.835927
Target:  5'- gGGCGcgCCCgucgcGGUggcgGUCCCGcAGGCGg -3'
miRNA:   3'- -CCGCuaGGGa----CCAg---CAGGGCuUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 108106 0.68 0.905492
Target:  5'- cGGCG-UCCCcgccucggcGGUCcgcgGUCCCGAGAGgCGc -3'
miRNA:   3'- -CCGCuAGGGa--------CCAG----CAGGGCUUUC-GC- -5'
9361 5' -56.4 NC_002512.2 + 108769 0.67 0.93674
Target:  5'- gGGCGAUCCggCU-GUCGUCaCCGAAcucuacgGGCc -3'
miRNA:   3'- -CCGCUAGG--GAcCAGCAG-GGCUU-------UCGc -5'
9361 5' -56.4 NC_002512.2 + 110447 0.66 0.965641
Target:  5'- aGGCGGaggacgcgcaccaggUCCCcgcGGUCcacgcUCCCGAGcAGCGg -3'
miRNA:   3'- -CCGCU---------------AGGGa--CCAGc----AGGGCUU-UCGC- -5'
9361 5' -56.4 NC_002512.2 + 122287 0.67 0.932466
Target:  5'- uGGUGcugCuCCUGGUCGUCgUGAccaagaAGGCGa -3'
miRNA:   3'- -CCGCua-G-GGACCAGCAGgGCU------UUCGC- -5'
9361 5' -56.4 NC_002512.2 + 126372 0.68 0.905492
Target:  5'- -aCGGUCCuCUGGcCG-CCCGGgaGAGCGc -3'
miRNA:   3'- ccGCUAGG-GACCaGCaGGGCU--UUCGC- -5'
9361 5' -56.4 NC_002512.2 + 126512 0.73 0.683128
Target:  5'- cGCGAgCCuCUGGUCGgacgaCCCGAccGCGg -3'
miRNA:   3'- cCGCUaGG-GACCAGCa----GGGCUuuCGC- -5'
9361 5' -56.4 NC_002512.2 + 126985 0.67 0.927508
Target:  5'- cGCGGUCCUcucccagcgcgGGUCGUaCCCGGgucccccguAGGCGu -3'
miRNA:   3'- cCGCUAGGGa----------CCAGCA-GGGCU---------UUCGC- -5'
9361 5' -56.4 NC_002512.2 + 132428 0.69 0.858831
Target:  5'- cGGCGAUCCagaaccGGUUGcgcucCCCGgcGGCGg -3'
miRNA:   3'- -CCGCUAGGga----CCAGCa----GGGCuuUCGC- -5'
9361 5' -56.4 NC_002512.2 + 132741 0.68 0.905492
Target:  5'- aGGCGcagCgCgGcGUCGUCCCGcAGGCGg -3'
miRNA:   3'- -CCGCua-GgGaC-CAGCAGGGCuUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 135665 0.75 0.556432
Target:  5'- uGGUGAUCC-UGGUCGUCCuCGuGGGGCu -3'
miRNA:   3'- -CCGCUAGGgACCAGCAGG-GC-UUUCGc -5'
9361 5' -56.4 NC_002512.2 + 141702 0.67 0.922332
Target:  5'- -aCGAcUCCCUccUCGUCCCGGAcGCGa -3'
miRNA:   3'- ccGCU-AGGGAccAGCAGGGCUUuCGC- -5'
9361 5' -56.4 NC_002512.2 + 141934 0.75 0.546853
Target:  5'- cGGCG-UCaccaaCUGGUCGUCCaUGAGAGUGa -3'
miRNA:   3'- -CCGCuAGg----GACCAGCAGG-GCUUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 143525 0.66 0.950119
Target:  5'- gGGCGcgCCUggcGGccUCGUCgCCGucGGCGg -3'
miRNA:   3'- -CCGCuaGGGa--CC--AGCAG-GGCuuUCGC- -5'
9361 5' -56.4 NC_002512.2 + 148808 0.68 0.905492
Target:  5'- cGGCaccGUCUC-GGagcUCGUCCUGggGGCGg -3'
miRNA:   3'- -CCGc--UAGGGaCC---AGCAGGGCuuUCGC- -5'
9361 5' -56.4 NC_002512.2 + 151546 0.68 0.899446
Target:  5'- aGgGGUCCCgucccGGUCucgccuUCCCGAGAGCc -3'
miRNA:   3'- cCgCUAGGGa----CCAGc-----AGGGCUUUCGc -5'
9361 5' -56.4 NC_002512.2 + 152909 0.77 0.463572
Target:  5'- aGCGGUCCCcGGUCgGUCagCGGGAGCGg -3'
miRNA:   3'- cCGCUAGGGaCCAG-CAGg-GCUUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 152957 0.73 0.67341
Target:  5'- aGCGGUCCCcGGUCGggucggCGGGAGCGg -3'
miRNA:   3'- cCGCUAGGGaCCAGCagg---GCUUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.