miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9365 3' -52 NC_002512.2 + 214872 0.67 0.992839
Target:  5'- aCCUGGccuacGUCugCCUCAgccCGgacaagcugCGGGACu -3'
miRNA:   3'- -GGACU-----UAGugGGAGU---GCaua------GCCCUG- -5'
9365 3' -52 NC_002512.2 + 193984 0.77 0.712122
Target:  5'- uCCUGAccgCGCUCUcCAgGUAUCGGGAUg -3'
miRNA:   3'- -GGACUua-GUGGGA-GUgCAUAGCCCUG- -5'
9365 3' -52 NC_002512.2 + 124660 0.76 0.751007
Target:  5'- gCUGAucGUCACCCUCACcgccagaCGGGACc -3'
miRNA:   3'- gGACU--UAGUGGGAGUGcaua---GCCCUG- -5'
9365 3' -52 NC_002512.2 + 203847 0.73 0.870607
Target:  5'- uCUUcAAUCACCCUCAUGUgaucaaugaauGUCGcGGACg -3'
miRNA:   3'- -GGAcUUAGUGGGAGUGCA-----------UAGC-CCUG- -5'
9365 3' -52 NC_002512.2 + 211885 0.72 0.921862
Target:  5'- cCCUGGagcggGUCACCUUCcggggcugccGCGUcgucgagcGUCGGGACc -3'
miRNA:   3'- -GGACU-----UAGUGGGAG----------UGCA--------UAGCCCUG- -5'
9365 3' -52 NC_002512.2 + 194305 0.7 0.9652
Target:  5'- aCCcGAcagGUCACCUUCcuCGUGgccCGGGACg -3'
miRNA:   3'- -GGaCU---UAGUGGGAGu-GCAUa--GCCCUG- -5'
9365 3' -52 NC_002512.2 + 130862 0.69 0.97881
Target:  5'- --cGAggCGCCCUCGCcgacgcgcccUAUCGGGGCc -3'
miRNA:   3'- ggaCUuaGUGGGAGUGc---------AUAGCCCUG- -5'
9365 3' -52 NC_002512.2 + 225635 0.68 0.982968
Target:  5'- aCCUGuAUCcCCCgaacCACccGUCGGGGCu -3'
miRNA:   3'- -GGACuUAGuGGGa---GUGcaUAGCCCUG- -5'
9365 3' -52 NC_002512.2 + 164048 0.68 0.98801
Target:  5'- uCCUGGAgcugUACUCUCGCGgcgagAUCcGGGCc -3'
miRNA:   3'- -GGACUUa---GUGGGAGUGCa----UAGcCCUG- -5'
9365 3' -52 NC_002512.2 + 225374 0.68 0.98927
Target:  5'- uCCUccucCACCCUCGCGUccAUCcucuucgGGGACg -3'
miRNA:   3'- -GGAcuuaGUGGGAGUGCA--UAG-------CCCUG- -5'
9365 3' -52 NC_002512.2 + 75513 0.67 0.992839
Target:  5'- --cGGAUUACCCUCgACGUugaCGGGcACc -3'
miRNA:   3'- ggaCUUAGUGGGAG-UGCAua-GCCC-UG- -5'
9365 3' -52 NC_002512.2 + 183956 0.66 0.997496
Target:  5'- cCCggGAcgCGCgCUCggGCGUcgucgccuGUCGGGGCg -3'
miRNA:   3'- -GGa-CUuaGUGgGAG--UGCA--------UAGCCCUG- -5'
9365 3' -52 NC_002512.2 + 207970 0.67 0.993762
Target:  5'- ----cGUCGCCCUC-CGUAgCGGcGACg -3'
miRNA:   3'- ggacuUAGUGGGAGuGCAUaGCC-CUG- -5'
9365 3' -52 NC_002512.2 + 141777 0.67 0.994587
Target:  5'- cCCUGAccgugAUCAgCCC-CGCGgUGUCGGcGAUc -3'
miRNA:   3'- -GGACU-----UAGU-GGGaGUGC-AUAGCC-CUG- -5'
9365 3' -52 NC_002512.2 + 190869 0.67 0.994587
Target:  5'- aCCUGcggggggCuuuCCC-CGCGUcgCGGGGCg -3'
miRNA:   3'- -GGACuua----Gu--GGGaGUGCAuaGCCCUG- -5'
9365 3' -52 NC_002512.2 + 155663 0.66 0.995973
Target:  5'- gCCgu--UCGCCC-CGCG--UCGGGACc -3'
miRNA:   3'- -GGacuuAGUGGGaGUGCauAGCCCUG- -5'
9365 3' -52 NC_002512.2 + 227442 0.66 0.996548
Target:  5'- gCCgcGGUCACCUUCGCGcUGcCGGGGg -3'
miRNA:   3'- -GGacUUAGUGGGAGUGC-AUaGCCCUg -5'
9365 3' -52 NC_002512.2 + 199381 0.66 0.997054
Target:  5'- gCUGccUCACCUUCACGaacCGGuGGCg -3'
miRNA:   3'- gGACuuAGUGGGAGUGCauaGCC-CUG- -5'
9365 3' -52 NC_002512.2 + 92981 0.66 0.997054
Target:  5'- gCUGAcGUCGCCCgacCugGUGgccgucUCGGuGGCg -3'
miRNA:   3'- gGACU-UAGUGGGa--GugCAU------AGCC-CUG- -5'
9365 3' -52 NC_002512.2 + 78030 0.66 0.997054
Target:  5'- --cGAGUCAUCCggUCGCGUGUCcgacacgcGGGCa -3'
miRNA:   3'- ggaCUUAGUGGG--AGUGCAUAGc-------CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.