Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9368 | 5' | -54.4 | NC_002512.2 | + | 192690 | 0.77 | 0.500775 |
Target: 5'- gUGUgGCGGCGCgCCGAGGCCGUc--- -3' miRNA: 3'- aGCAgUGCCGUG-GGCUCUGGCAuaaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 105136 | 0.75 | 0.608923 |
Target: 5'- gUCGUCGCcGCACCCGAcggacGCCGUGUa- -3' miRNA: 3'- -AGCAGUGcCGUGGGCUc----UGGCAUAaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 154759 | 0.73 | 0.728564 |
Target: 5'- gCGUCGCGGUGCCCGucuccCCGUGUc- -3' miRNA: 3'- aGCAGUGCCGUGGGCucu--GGCAUAaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 44466 | 0.73 | 0.747774 |
Target: 5'- aCGUCGCGGuCugCC-AGAUCGUGUUg -3' miRNA: 3'- aGCAGUGCC-GugGGcUCUGGCAUAAa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 108420 | 0.72 | 0.784944 |
Target: 5'- cUCGUCuGCGcCGCCCGGGGCCGg---- -3' miRNA: 3'- -AGCAG-UGCcGUGGGCUCUGGCauaaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 99631 | 0.72 | 0.801887 |
Target: 5'- gUCGUCGCccucggagggcccGGCGCCCGAG-CCGa---- -3' miRNA: 3'- -AGCAGUG-------------CCGUGGGCUCuGGCauaaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 124570 | 0.71 | 0.83655 |
Target: 5'- cUCGgccCACGGCucCCUGAcGGCCGUGUUc -3' miRNA: 3'- -AGCa--GUGCCGu-GGGCU-CUGGCAUAAa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 187317 | 0.71 | 0.844565 |
Target: 5'- cUCGccUCGCGGCGCCCGc--CCGUGUc- -3' miRNA: 3'- -AGC--AGUGCCGUGGGCucuGGCAUAaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 133897 | 0.71 | 0.852393 |
Target: 5'- -gGUCGCGGCGCCgGAcGCCGa---- -3' miRNA: 3'- agCAGUGCCGUGGgCUcUGGCauaaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 153202 | 0.7 | 0.860027 |
Target: 5'- ----gGCGGCACCCGGGACCcGUc--- -3' miRNA: 3'- agcagUGCCGUGGGCUCUGG-CAuaaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 140473 | 0.7 | 0.888518 |
Target: 5'- cCGUCACGcCGCCuCGcGACCGUAg-- -3' miRNA: 3'- aGCAGUGCcGUGG-GCuCUGGCAUaaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 145101 | 0.7 | 0.888518 |
Target: 5'- gCGUCGCGGCugCCG--GCCGa---- -3' miRNA: 3'- aGCAGUGCCGugGGCucUGGCauaaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 207486 | 0.69 | 0.901468 |
Target: 5'- cUCGUCuCGGCGCCCGucuCCGg---- -3' miRNA: 3'- -AGCAGuGCCGUGGGCucuGGCauaaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 140590 | 0.69 | 0.913518 |
Target: 5'- aCGUCGCGaaCGCCCcgucgaucGAGACCGUAg-- -3' miRNA: 3'- aGCAGUGCc-GUGGG--------CUCUGGCAUaaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 121138 | 0.69 | 0.913518 |
Target: 5'- cCGUCgACGGCGgCCGAGacGCCGg---- -3' miRNA: 3'- aGCAG-UGCCGUgGGCUC--UGGCauaaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 212997 | 0.68 | 0.929867 |
Target: 5'- gUCGcCGCGGCcgucggGCCCGGGGCCc----- -3' miRNA: 3'- -AGCaGUGCCG------UGGGCUCUGGcauaaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 167021 | 0.68 | 0.934855 |
Target: 5'- gCGUCGCGGC-CCCGAuGCUGc---- -3' miRNA: 3'- aGCAGUGCCGuGGGCUcUGGCauaaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 196902 | 0.68 | 0.944137 |
Target: 5'- gCGUCAUGGCcaGCCUcaugGAGGCCGa---- -3' miRNA: 3'- aGCAGUGCCG--UGGG----CUCUGGCauaaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 224925 | 0.68 | 0.944137 |
Target: 5'- cCGUCGCGGgGaCCGGGuCCGUGc-- -3' miRNA: 3'- aGCAGUGCCgUgGGCUCuGGCAUaaa -5' |
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9368 | 5' | -54.4 | NC_002512.2 | + | 98139 | 0.68 | 0.944137 |
Target: 5'- gUCGUCGCGGcCGCCCGccccGGCgGUc--- -3' miRNA: 3'- -AGCAGUGCC-GUGGGCu---CUGgCAuaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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