miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9368 5' -54.4 NC_002512.2 + 44466 0.73 0.747774
Target:  5'- aCGUCGCGGuCugCC-AGAUCGUGUUg -3'
miRNA:   3'- aGCAGUGCC-GugGGcUCUGGCAUAAa -5'
9368 5' -54.4 NC_002512.2 + 55318 0.67 0.963414
Target:  5'- uUCGUCcCGGCACUCGAcuCCGg---- -3'
miRNA:   3'- -AGCAGuGCCGUGGGCUcuGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 92594 0.67 0.966624
Target:  5'- -aGggGCGGCGguCCCGAGGCCGg---- -3'
miRNA:   3'- agCagUGCCGU--GGGCUCUGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 96873 0.66 0.972438
Target:  5'- cUCGaUCGCGGCGcacuuCCCGgGGGCCGg---- -3'
miRNA:   3'- -AGC-AGUGCCGU-----GGGC-UCUGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 98139 0.68 0.944137
Target:  5'- gUCGUCGCGGcCGCCCGccccGGCgGUc--- -3'
miRNA:   3'- -AGCAGUGCC-GUGGGCu---CUGgCAuaaa -5'
9368 5' -54.4 NC_002512.2 + 99631 0.72 0.801887
Target:  5'- gUCGUCGCccucggagggcccGGCGCCCGAG-CCGa---- -3'
miRNA:   3'- -AGCAGUG-------------CCGUGGGCUCuGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 100741 0.66 0.979733
Target:  5'- aUCGUCGUGGgGCCCGuuguacugcgcgAGGCUGUAg-- -3'
miRNA:   3'- -AGCAGUGCCgUGGGC------------UCUGGCAUaaa -5'
9368 5' -54.4 NC_002512.2 + 105136 0.75 0.608923
Target:  5'- gUCGUCGCcGCACCCGAcggacGCCGUGUa- -3'
miRNA:   3'- -AGCAGUGcCGUGGGCUc----UGGCAUAaa -5'
9368 5' -54.4 NC_002512.2 + 106121 0.67 0.959995
Target:  5'- aCGUCACGGgagaGCCCGAGGagcuCCGc---- -3'
miRNA:   3'- aGCAGUGCCg---UGGGCUCU----GGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 108420 0.72 0.784944
Target:  5'- cUCGUCuGCGcCGCCCGGGGCCGg---- -3'
miRNA:   3'- -AGCAG-UGCcGUGGGCUCUGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 108511 0.66 0.979733
Target:  5'- cCGggCcCGGCGCCCGAccGGCCGg---- -3'
miRNA:   3'- aGCa-GuGCCGUGGGCU--CUGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 113493 0.67 0.96963
Target:  5'- gCGUCAgGGCgACCCGccccggGGACCGc---- -3'
miRNA:   3'- aGCAGUgCCG-UGGGC------UCUGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 121138 0.69 0.913518
Target:  5'- cCGUCgACGGCGgCCGAGacGCCGg---- -3'
miRNA:   3'- aGCAG-UGCCGUgGGCUC--UGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 124570 0.71 0.83655
Target:  5'- cUCGgccCACGGCucCCUGAcGGCCGUGUUc -3'
miRNA:   3'- -AGCa--GUGCCGu-GGGCU-CUGGCAUAAa -5'
9368 5' -54.4 NC_002512.2 + 127196 0.67 0.959995
Target:  5'- gCGUCGCcGaCGCCCGAGACgGg---- -3'
miRNA:   3'- aGCAGUGcC-GUGGGCUCUGgCauaaa -5'
9368 5' -54.4 NC_002512.2 + 133897 0.71 0.852393
Target:  5'- -gGUCGCGGCGCCgGAcGCCGa---- -3'
miRNA:   3'- agCAGUGCCGUGGgCUcUGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 140269 0.66 0.972438
Target:  5'- -aGUCuuCGGCGCCCGAGcGCCc----- -3'
miRNA:   3'- agCAGu-GCCGUGGGCUC-UGGcauaaa -5'
9368 5' -54.4 NC_002512.2 + 140473 0.7 0.888518
Target:  5'- cCGUCACGcCGCCuCGcGACCGUAg-- -3'
miRNA:   3'- aGCAGUGCcGUGG-GCuCUGGCAUaaa -5'
9368 5' -54.4 NC_002512.2 + 140590 0.69 0.913518
Target:  5'- aCGUCGCGaaCGCCCcgucgaucGAGACCGUAg-- -3'
miRNA:   3'- aGCAGUGCc-GUGGG--------CUCUGGCAUaaa -5'
9368 5' -54.4 NC_002512.2 + 142804 0.67 0.959995
Target:  5'- aCGUCGCcccGCgACCCGAGgaacGCCGUAa-- -3'
miRNA:   3'- aGCAGUGc--CG-UGGGCUC----UGGCAUaaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.