Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9369 | 3' | -47.2 | NC_002512.2 | + | 95852 | 0.66 | 0.99999 |
Target: 5'- gCCGGGggcggCGUCCUCccaggGCCGCGc -3' miRNA: 3'- -GGCUUaaaa-GCGGGAGuaa--UGGUGCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 99628 | 0.67 | 0.999975 |
Target: 5'- gCGGucg-UCGCCCUCGgaggGCC-CGg -3' miRNA: 3'- gGCUuaaaAGCGGGAGUaa--UGGuGCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 101973 | 0.68 | 0.99983 |
Target: 5'- aCCGAuc---CGCCCUCGccucCCACGg -3' miRNA: 3'- -GGCUuaaaaGCGGGAGUaau-GGUGCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 103388 | 0.68 | 0.999898 |
Target: 5'- gCCGAGgcgcUCGCgCUCcgggGCCACGa -3' miRNA: 3'- -GGCUUaaa-AGCGgGAGuaa-UGGUGCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 128289 | 0.66 | 0.999993 |
Target: 5'- gCCGAcggc-CGCCCgCAcgACCGCGg -3' miRNA: 3'- -GGCUuaaaaGCGGGaGUaaUGGUGCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 129987 | 0.67 | 0.999955 |
Target: 5'- cCCGG-----CGCCCUCGacggGCCGCGc -3' miRNA: 3'- -GGCUuaaaaGCGGGAGUaa--UGGUGCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 130874 | 0.67 | 0.999975 |
Target: 5'- gCCGAcg---CGCCCuaUCGggGCCGCGc -3' miRNA: 3'- -GGCUuaaaaGCGGG--AGUaaUGGUGCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 142532 | 0.67 | 0.999966 |
Target: 5'- aCGGuacagUUCGCCC-CGUcgACCGCGc -3' miRNA: 3'- gGCUuaa--AAGCGGGaGUAa-UGGUGCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 148680 | 0.66 | 0.99999 |
Target: 5'- gCGGGccgUgGCCCUCGUcGCCGCu- -3' miRNA: 3'- gGCUUaaaAgCGGGAGUAaUGGUGca -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 155659 | 0.72 | 0.994434 |
Target: 5'- uCCGGccgUUCGCCCcgcgUCGggACCGCGg -3' miRNA: 3'- -GGCUuaaAAGCGGG----AGUaaUGGUGCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 171415 | 0.72 | 0.992576 |
Target: 5'- gCCGggUc-UCGCUCUCcuGUUACCugGg -3' miRNA: 3'- -GGCuuAaaAGCGGGAG--UAAUGGugCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 180418 | 0.66 | 0.999982 |
Target: 5'- gUCGAAg--UCGUCCUCGgugACgGCGc -3' miRNA: 3'- -GGCUUaaaAGCGGGAGUaa-UGgUGCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 188999 | 0.67 | 0.99994 |
Target: 5'- cCCGG---UUCGUCCUCuu--CCGCGg -3' miRNA: 3'- -GGCUuaaAAGCGGGAGuaauGGUGCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 193134 | 0.68 | 0.999898 |
Target: 5'- cCCGAcgUcacggUCGUCCUCGUccugGCCGgCGUc -3' miRNA: 3'- -GGCUuaAa----AGCGGGAGUAa---UGGU-GCA- -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 193179 | 0.68 | 0.999867 |
Target: 5'- gCGAugg-UCGCCUUCuucuucgACCGCGUc -3' miRNA: 3'- gGCUuaaaAGCGGGAGuaa----UGGUGCA- -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 204316 | 0.69 | 0.999653 |
Target: 5'- uCCGcuGGUcgUCGCCCUCA--ACCGCc- -3' miRNA: 3'- -GGC--UUAaaAGCGGGAGUaaUGGUGca -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 205162 | 0.66 | 0.999987 |
Target: 5'- cCCG-----UCGCUCUCGacGCCGCGUc -3' miRNA: 3'- -GGCuuaaaAGCGGGAGUaaUGGUGCA- -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 208824 | 0.69 | 0.999566 |
Target: 5'- gCCGcccgugCGCCCUCAcgcGCCGCGc -3' miRNA: 3'- -GGCuuaaaaGCGGGAGUaa-UGGUGCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 214291 | 0.66 | 0.99999 |
Target: 5'- cCCGAGggcuucaccUUCGUCUUCGgcgUGCCGCa- -3' miRNA: 3'- -GGCUUaa-------AAGCGGGAGUa--AUGGUGca -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 214413 | 0.66 | 0.999982 |
Target: 5'- gCCGGAgcgcgccgCGCCCgagg-ACCGCGUc -3' miRNA: 3'- -GGCUUaaaa----GCGGGaguaaUGGUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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