miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9369 3' -47.2 NC_002512.2 + 222218 0.66 0.999995
Target:  5'- gUCGGGg--UgGCCgUCGggGCCGCGUc -3'
miRNA:   3'- -GGCUUaaaAgCGGgAGUaaUGGUGCA- -5'
9369 3' -47.2 NC_002512.2 + 219654 0.74 0.981956
Target:  5'- aCCGGAggUUCGCCCgUCGggAUCugGg -3'
miRNA:   3'- -GGCUUaaAAGCGGG-AGUaaUGGugCa -5'
9369 3' -47.2 NC_002512.2 + 218877 0.73 0.987398
Target:  5'- aCCGAcgccGUgcgCGCCCUCAUcgcgcGCCACGc -3'
miRNA:   3'- -GGCU----UAaaaGCGGGAGUAa----UGGUGCa -5'
9369 3' -47.2 NC_002512.2 + 218253 0.68 0.999898
Target:  5'- uCCGggUcggCGUCCUCc--ACCAUGUa -3'
miRNA:   3'- -GGCuuAaaaGCGGGAGuaaUGGUGCA- -5'
9369 3' -47.2 NC_002512.2 + 217177 0.69 0.999724
Target:  5'- gUCGggUUcaUCGCCCUCcgcGCCAgGUu -3'
miRNA:   3'- -GGCuuAAa-AGCGGGAGuaaUGGUgCA- -5'
9369 3' -47.2 NC_002512.2 + 216856 0.7 0.998531
Target:  5'- gUGAuc--UCGCCCUCGUcguCCGCGUc -3'
miRNA:   3'- gGCUuaaaAGCGGGAGUAau-GGUGCA- -5'
9369 3' -47.2 NC_002512.2 + 216155 0.67 0.99994
Target:  5'- aCCGGcgUcgCGCCCcUCAggcucCCGCGUc -3'
miRNA:   3'- -GGCUuaAaaGCGGG-AGUaau--GGUGCA- -5'
9369 3' -47.2 NC_002512.2 + 214932 0.68 0.999898
Target:  5'- gCCGcGgcUUCGUCCUCccgugGCCGCGg -3'
miRNA:   3'- -GGCuUaaAAGCGGGAGuaa--UGGUGCa -5'
9369 3' -47.2 NC_002512.2 + 214413 0.66 0.999982
Target:  5'- gCCGGAgcgcgccgCGCCCgagg-ACCGCGUc -3'
miRNA:   3'- -GGCUUaaaa----GCGGGaguaaUGGUGCA- -5'
9369 3' -47.2 NC_002512.2 + 214291 0.66 0.99999
Target:  5'- cCCGAGggcuucaccUUCGUCUUCGgcgUGCCGCa- -3'
miRNA:   3'- -GGCUUaa-------AAGCGGGAGUa--AUGGUGca -5'
9369 3' -47.2 NC_002512.2 + 208824 0.69 0.999566
Target:  5'- gCCGcccgugCGCCCUCAcgcGCCGCGc -3'
miRNA:   3'- -GGCuuaaaaGCGGGAGUaa-UGGUGCa -5'
9369 3' -47.2 NC_002512.2 + 205162 0.66 0.999987
Target:  5'- cCCG-----UCGCUCUCGacGCCGCGUc -3'
miRNA:   3'- -GGCuuaaaAGCGGGAGUaaUGGUGCA- -5'
9369 3' -47.2 NC_002512.2 + 204316 0.69 0.999653
Target:  5'- uCCGcuGGUcgUCGCCCUCA--ACCGCc- -3'
miRNA:   3'- -GGC--UUAaaAGCGGGAGUaaUGGUGca -5'
9369 3' -47.2 NC_002512.2 + 193179 0.68 0.999867
Target:  5'- gCGAugg-UCGCCUUCuucuucgACCGCGUc -3'
miRNA:   3'- gGCUuaaaAGCGGGAGuaa----UGGUGCA- -5'
9369 3' -47.2 NC_002512.2 + 193134 0.68 0.999898
Target:  5'- cCCGAcgUcacggUCGUCCUCGUccugGCCGgCGUc -3'
miRNA:   3'- -GGCUuaAa----AGCGGGAGUAa---UGGU-GCA- -5'
9369 3' -47.2 NC_002512.2 + 188999 0.67 0.99994
Target:  5'- cCCGG---UUCGUCCUCuu--CCGCGg -3'
miRNA:   3'- -GGCUuaaAAGCGGGAGuaauGGUGCa -5'
9369 3' -47.2 NC_002512.2 + 180418 0.66 0.999982
Target:  5'- gUCGAAg--UCGUCCUCGgugACgGCGc -3'
miRNA:   3'- -GGCUUaaaAGCGGGAGUaa-UGgUGCa -5'
9369 3' -47.2 NC_002512.2 + 171415 0.72 0.992576
Target:  5'- gCCGggUc-UCGCUCUCcuGUUACCugGg -3'
miRNA:   3'- -GGCuuAaaAGCGGGAG--UAAUGGugCa -5'
9369 3' -47.2 NC_002512.2 + 155659 0.72 0.994434
Target:  5'- uCCGGccgUUCGCCCcgcgUCGggACCGCGg -3'
miRNA:   3'- -GGCUuaaAAGCGGG----AGUaaUGGUGCa -5'
9369 3' -47.2 NC_002512.2 + 148680 0.66 0.99999
Target:  5'- gCGGGccgUgGCCCUCGUcGCCGCu- -3'
miRNA:   3'- gGCUUaaaAgCGGGAGUAaUGGUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.