miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9369 3' -47.2 NC_002512.2 + 180418 0.66 0.999982
Target:  5'- gUCGAAg--UCGUCCUCGgugACgGCGc -3'
miRNA:   3'- -GGCUUaaaAGCGGGAGUaa-UGgUGCa -5'
9369 3' -47.2 NC_002512.2 + 214413 0.66 0.999982
Target:  5'- gCCGGAgcgcgccgCGCCCgagg-ACCGCGUc -3'
miRNA:   3'- -GGCUUaaaa----GCGGGaguaaUGGUGCA- -5'
9369 3' -47.2 NC_002512.2 + 205162 0.66 0.999987
Target:  5'- cCCG-----UCGCUCUCGacGCCGCGUc -3'
miRNA:   3'- -GGCuuaaaAGCGGGAGUaaUGGUGCA- -5'
9369 3' -47.2 NC_002512.2 + 95852 0.66 0.99999
Target:  5'- gCCGGGggcggCGUCCUCccaggGCCGCGc -3'
miRNA:   3'- -GGCUUaaaa-GCGGGAGuaa--UGGUGCa -5'
9369 3' -47.2 NC_002512.2 + 148680 0.66 0.99999
Target:  5'- gCGGGccgUgGCCCUCGUcGCCGCu- -3'
miRNA:   3'- gGCUUaaaAgCGGGAGUAaUGGUGca -5'
9369 3' -47.2 NC_002512.2 + 214291 0.66 0.99999
Target:  5'- cCCGAGggcuucaccUUCGUCUUCGgcgUGCCGCa- -3'
miRNA:   3'- -GGCUUaa-------AAGCGGGAGUa--AUGGUGca -5'
9369 3' -47.2 NC_002512.2 + 128289 0.66 0.999993
Target:  5'- gCCGAcggc-CGCCCgCAcgACCGCGg -3'
miRNA:   3'- -GGCUuaaaaGCGGGaGUaaUGGUGCa -5'
9369 3' -47.2 NC_002512.2 + 222218 0.66 0.999995
Target:  5'- gUCGGGg--UgGCCgUCGggGCCGCGUc -3'
miRNA:   3'- -GGCUUaaaAgCGGgAGUaaUGGUGCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.