Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9369 | 3' | -47.2 | NC_002512.2 | + | 180418 | 0.66 | 0.999982 |
Target: 5'- gUCGAAg--UCGUCCUCGgugACgGCGc -3' miRNA: 3'- -GGCUUaaaAGCGGGAGUaa-UGgUGCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 214413 | 0.66 | 0.999982 |
Target: 5'- gCCGGAgcgcgccgCGCCCgagg-ACCGCGUc -3' miRNA: 3'- -GGCUUaaaa----GCGGGaguaaUGGUGCA- -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 205162 | 0.66 | 0.999987 |
Target: 5'- cCCG-----UCGCUCUCGacGCCGCGUc -3' miRNA: 3'- -GGCuuaaaAGCGGGAGUaaUGGUGCA- -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 95852 | 0.66 | 0.99999 |
Target: 5'- gCCGGGggcggCGUCCUCccaggGCCGCGc -3' miRNA: 3'- -GGCUUaaaa-GCGGGAGuaa--UGGUGCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 148680 | 0.66 | 0.99999 |
Target: 5'- gCGGGccgUgGCCCUCGUcGCCGCu- -3' miRNA: 3'- gGCUUaaaAgCGGGAGUAaUGGUGca -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 214291 | 0.66 | 0.99999 |
Target: 5'- cCCGAGggcuucaccUUCGUCUUCGgcgUGCCGCa- -3' miRNA: 3'- -GGCUUaa-------AAGCGGGAGUa--AUGGUGca -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 128289 | 0.66 | 0.999993 |
Target: 5'- gCCGAcggc-CGCCCgCAcgACCGCGg -3' miRNA: 3'- -GGCUuaaaaGCGGGaGUaaUGGUGCa -5' |
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9369 | 3' | -47.2 | NC_002512.2 | + | 222218 | 0.66 | 0.999995 |
Target: 5'- gUCGGGg--UgGCCgUCGggGCCGCGUc -3' miRNA: 3'- -GGCUUaaaAgCGGgAGUaaUGGUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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