miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9369 5' -46.2 NC_002512.2 + 226205 0.66 1
Target:  5'- --cCGUCGggGACGGGAg--GACcucCGGa -3'
miRNA:   3'- cauGCAGCa-UUGCCCUauaUUGa--GCC- -5'
9369 5' -46.2 NC_002512.2 + 228125 0.66 1
Target:  5'- -aACGUCGUgcugggcgccGACGGGcgcgAGCUCaGGu -3'
miRNA:   3'- caUGCAGCA----------UUGCCCuauaUUGAG-CC- -5'
9369 5' -46.2 NC_002512.2 + 200348 0.66 0.999999
Target:  5'- --cUGUCGgcgGACGGGGg--GACggggCGGg -3'
miRNA:   3'- cauGCAGCa--UUGCCCUauaUUGa---GCC- -5'
9369 5' -46.2 NC_002512.2 + 217899 0.66 0.999999
Target:  5'- -cGCGUCGUcgAGCGGcGGUAcGAgaCGGu -3'
miRNA:   3'- caUGCAGCA--UUGCC-CUAUaUUgaGCC- -5'
9369 5' -46.2 NC_002512.2 + 179797 0.67 0.999997
Target:  5'- gGUcCGUCGUGuGCGGGucgaacagGUAGgUCGGu -3'
miRNA:   3'- -CAuGCAGCAU-UGCCCua------UAUUgAGCC- -5'
9369 5' -46.2 NC_002512.2 + 226710 0.67 0.999997
Target:  5'- -gGCGUCGagcGACGGGA---GGCcgCGGg -3'
miRNA:   3'- caUGCAGCa--UUGCCCUauaUUGa-GCC- -5'
9369 5' -46.2 NC_002512.2 + 164251 0.68 0.999988
Target:  5'- -gGCGcCGUGGCGGGGgccg--UCGGg -3'
miRNA:   3'- caUGCaGCAUUGCCCUauauugAGCC- -5'
9369 5' -46.2 NC_002512.2 + 197875 0.68 0.999988
Target:  5'- cUGCGgggcaaGUGACGGGAcccgguuCUCGGg -3'
miRNA:   3'- cAUGCag----CAUUGCCCUauauu--GAGCC- -5'
9369 5' -46.2 NC_002512.2 + 212146 0.68 0.999977
Target:  5'- uGUGCGUCG--GCGGGcacUGGCggCGGg -3'
miRNA:   3'- -CAUGCAGCauUGCCCuauAUUGa-GCC- -5'
9369 5' -46.2 NC_002512.2 + 220862 0.68 0.999977
Target:  5'- cUACGUCGUccGCGGGGc----CUCGGc -3'
miRNA:   3'- cAUGCAGCAu-UGCCCUauauuGAGCC- -5'
9369 5' -46.2 NC_002512.2 + 224593 0.68 0.999969
Target:  5'- uUACGUCagGgcGCGGGAcgcgGUGccgaccggGCUCGGg -3'
miRNA:   3'- cAUGCAG--CauUGCCCUa---UAU--------UGAGCC- -5'
9369 5' -46.2 NC_002512.2 + 186674 0.68 0.999969
Target:  5'- -gACGUCGUGcgauACGGcGuccggAACUCGGc -3'
miRNA:   3'- caUGCAGCAU----UGCC-Cuaua-UUGAGCC- -5'
9369 5' -46.2 NC_002512.2 + 202174 0.69 0.999958
Target:  5'- cGUG-GUCGUGACGGGAg--AACgcgcguucCGGa -3'
miRNA:   3'- -CAUgCAGCAUUGCCCUauaUUGa-------GCC- -5'
9369 5' -46.2 NC_002512.2 + 154497 0.69 0.999927
Target:  5'- uUugGUCGUGGgcgcguccuCGGGcgAUGACUCa- -3'
miRNA:   3'- cAugCAGCAUU---------GCCCuaUAUUGAGcc -5'
9369 5' -46.2 NC_002512.2 + 46378 0.69 0.999927
Target:  5'- cGUACGUgGUAAUgaGGGcgAaAAUUCGGa -3'
miRNA:   3'- -CAUGCAgCAUUG--CCCuaUaUUGAGCC- -5'
9369 5' -46.2 NC_002512.2 + 16694 0.7 0.999841
Target:  5'- ---aGUCGUAuCGGGGUAUAauaACUCa- -3'
miRNA:   3'- caugCAGCAUuGCCCUAUAU---UGAGcc -5'
9369 5' -46.2 NC_002512.2 + 33038 0.7 0.999674
Target:  5'- -cGgGUUGggAACGGGGUGUGGCUCc- -3'
miRNA:   3'- caUgCAGCa-UUGCCCUAUAUUGAGcc -5'
9369 5' -46.2 NC_002512.2 + 218108 0.7 0.999674
Target:  5'- -gGCGUCGcgccCGGGGUc--GCUCGGg -3'
miRNA:   3'- caUGCAGCauu-GCCCUAuauUGAGCC- -5'
9369 5' -46.2 NC_002512.2 + 213519 0.71 0.999226
Target:  5'- -gGCGUCGUccggguCGGGGUGcc-CUCGGa -3'
miRNA:   3'- caUGCAGCAuu----GCCCUAUauuGAGCC- -5'
9369 5' -46.2 NC_002512.2 + 210425 0.71 0.999226
Target:  5'- -gGCGagGUc-CGGGAUGUGGCgUCGGg -3'
miRNA:   3'- caUGCagCAuuGCCCUAUAUUG-AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.