Results 41 - 50 of 50 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9370 | 5' | -57 | NC_002512.2 | + | 146179 | 0.7 | 0.770317 |
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Target: 5'- gCCGcGcGGCAcGGUCGCCCUgggCUCGACGa -3' miRNA: 3'- -GGC-C-UCGUuCCAGUGGGG---GAGUUGCa -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 111809 | 0.7 | 0.770317 |
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Target: 5'- gCCGGcGCcGGaGcCGCCCCCUCcGCGg -3' miRNA: 3'- -GGCCuCGuUC-CaGUGGGGGAGuUGCa -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 159060 | 0.7 | 0.757575 |
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Target: 5'- cCCGGGGCGAGGcggacgacgCGCCCCUcccccaaccugcgCAACGg -3' miRNA: 3'- -GGCCUCGUUCCa--------GUGGGGGa------------GUUGCa -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 157040 | 0.71 | 0.742769 |
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Target: 5'- cCCGGAGCGAGG--ACCCCggCAagGCGg -3' miRNA: 3'- -GGCCUCGUUCCagUGGGGgaGU--UGCa -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 88333 | 0.71 | 0.732455 |
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Target: 5'- gCCauGAGCGAGGUCACCCCgUaguccacCAugGUg -3' miRNA: 3'- -GGc-CUCGUUCCAGUGGGGgA-------GUugCA- -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 157071 | 0.71 | 0.723944 |
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Target: 5'- cCCGGGGUccGGGGUCGCCggcgCCCaCGGCGg -3' miRNA: 3'- -GGCCUCG--UUCCAGUGG----GGGaGUUGCa -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 140166 | 0.71 | 0.723944 |
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Target: 5'- uCCGGuccCAAGGUCACCCgCCacccguUCGGCGa -3' miRNA: 3'- -GGCCuc-GUUCCAGUGGG-GG------AGUUGCa -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 94669 | 0.71 | 0.723944 |
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Target: 5'- cCCGGGGCcGGGggGCCCCC-CGGCc- -3' miRNA: 3'- -GGCCUCGuUCCagUGGGGGaGUUGca -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 226483 | 0.72 | 0.67575 |
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Target: 5'- gCCGGGGCccGGG-CGCuCCCCUCGccGCGg -3' miRNA: 3'- -GGCCUCGu-UCCaGUG-GGGGAGU--UGCa -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 128412 | 0.75 | 0.529732 |
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Target: 5'- cCCGGuGGCGGGGUCGCCggagCCCUCcucGCGg -3' miRNA: 3'- -GGCC-UCGUUCCAGUGG----GGGAGu--UGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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