miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9370 5' -57 NC_002512.2 + 189186 0.67 0.901379
Target:  5'- gCCGGcaAGCAcccAGGUCGCCgCgggcggcaugCUCGACGUc -3'
miRNA:   3'- -GGCC--UCGU---UCCAGUGGgG----------GAGUUGCA- -5'
9370 5' -57 NC_002512.2 + 156932 0.67 0.901379
Target:  5'- -aGGAGCccacGGUCGCCaCCCUgGugGc -3'
miRNA:   3'- ggCCUCGuu--CCAGUGG-GGGAgUugCa -5'
9370 5' -57 NC_002512.2 + 202087 0.67 0.895171
Target:  5'- aCGGGGCGccGGUCACCUCgUCcgaccGCGUc -3'
miRNA:   3'- gGCCUCGUu-CCAGUGGGGgAGu----UGCA- -5'
9370 5' -57 NC_002512.2 + 191350 0.67 0.895171
Target:  5'- aCGGGGguAGGUCGCCgcgcgaCCUUGGCu- -3'
miRNA:   3'- gGCCUCguUCCAGUGGg-----GGAGUUGca -5'
9370 5' -57 NC_002512.2 + 105705 0.68 0.88875
Target:  5'- cCCGGcggacgAGCAgccAGGUgCACuCCCgCUCGACGa -3'
miRNA:   3'- -GGCC------UCGU---UCCA-GUG-GGG-GAGUUGCa -5'
9370 5' -57 NC_002512.2 + 103621 0.68 0.884798
Target:  5'- cCCGGuaccGCugGAGGUCggcuucggacacccgGCCCuCCUCGGCGg -3'
miRNA:   3'- -GGCCu---CG--UUCCAG---------------UGGG-GGAGUUGCa -5'
9370 5' -57 NC_002512.2 + 103981 0.68 0.882121
Target:  5'- gCCGGAGCu--GUCGCgCaCCCUgGACGc -3'
miRNA:   3'- -GGCCUCGuucCAGUG-G-GGGAgUUGCa -5'
9370 5' -57 NC_002512.2 + 186237 0.68 0.868254
Target:  5'- aCCGaGGGCGAGGUC-CCggUCCUCGgucACGa -3'
miRNA:   3'- -GGC-CUCGUUCCAGuGG--GGGAGU---UGCa -5'
9370 5' -57 NC_002512.2 + 219515 0.68 0.860291
Target:  5'- gCCGGcGUucGG-CACCCCCgucuucgUCGGCGUg -3'
miRNA:   3'- -GGCCuCGuuCCaGUGGGGG-------AGUUGCA- -5'
9370 5' -57 NC_002512.2 + 144570 0.68 0.856595
Target:  5'- aCCGGcgaccuacgucgagcGGCAGGcGUCgAUCCCCUCGcACGa -3'
miRNA:   3'- -GGCC---------------UCGUUC-CAG-UGGGGGAGU-UGCa -5'
9370 5' -57 NC_002512.2 + 165217 0.68 0.853605
Target:  5'- aCCGGcccGGCGAGG--ACCUCCgCGACGUg -3'
miRNA:   3'- -GGCC---UCGUUCCagUGGGGGaGUUGCA- -5'
9370 5' -57 NC_002512.2 + 90598 0.68 0.852853
Target:  5'- cCCGGGGCGGGcGccccccuUCGCCCCCgcgcgccgggCGGCGc -3'
miRNA:   3'- -GGCCUCGUUC-C-------AGUGGGGGa---------GUUGCa -5'
9370 5' -57 NC_002512.2 + 101295 0.68 0.851343
Target:  5'- cCCGGAcgucccggccucucGCAGGGUCgGCCCCCggaGGCc- -3'
miRNA:   3'- -GGCCU--------------CGUUCCAG-UGGGGGag-UUGca -5'
9370 5' -57 NC_002512.2 + 213349 0.69 0.846
Target:  5'- uCCGGAGcCAGGGggaCGCCCgCgcuggCGGCGa -3'
miRNA:   3'- -GGCCUC-GUUCCa--GUGGGgGa----GUUGCa -5'
9370 5' -57 NC_002512.2 + 95455 0.69 0.838217
Target:  5'- gCCaGGGCGAGGa-ACCCCCUgGGCa- -3'
miRNA:   3'- -GGcCUCGUUCCagUGGGGGAgUUGca -5'
9370 5' -57 NC_002512.2 + 98817 0.69 0.822138
Target:  5'- gCCGGAGCGAcGGaUCgGCCUCCggcgCGGCGc -3'
miRNA:   3'- -GGCCUCGUU-CC-AG-UGGGGGa---GUUGCa -5'
9370 5' -57 NC_002512.2 + 219427 0.69 0.822138
Target:  5'- cCCGGGGCGGcGGcgGCCUCCUCcGCGc -3'
miRNA:   3'- -GGCCUCGUU-CCagUGGGGGAGuUGCa -5'
9370 5' -57 NC_002512.2 + 204727 0.69 0.813856
Target:  5'- cCCGGGGCGGGGggccggACCCgggugCUCAGCGa -3'
miRNA:   3'- -GGCCUCGUUCCag----UGGGg----GAGUUGCa -5'
9370 5' -57 NC_002512.2 + 150681 0.7 0.791631
Target:  5'- gCGGGcGCGGcGGUCGCCCCgacggaccguuggcuCUCGGCGg -3'
miRNA:   3'- gGCCU-CGUU-CCAGUGGGG---------------GAGUUGCa -5'
9370 5' -57 NC_002512.2 + 198109 0.7 0.779284
Target:  5'- gCC-GAGUAGGGUUugGCCCCCUUGAgGUu -3'
miRNA:   3'- -GGcCUCGUUCCAG--UGGGGGAGUUgCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.