miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9370 5' -57 NC_002512.2 + 144570 0.68 0.856595
Target:  5'- aCCGGcgaccuacgucgagcGGCAGGcGUCgAUCCCCUCGcACGa -3'
miRNA:   3'- -GGCC---------------UCGUUC-CAG-UGGGGGAGU-UGCa -5'
9370 5' -57 NC_002512.2 + 219515 0.68 0.860291
Target:  5'- gCCGGcGUucGG-CACCCCCgucuucgUCGGCGUg -3'
miRNA:   3'- -GGCCuCGuuCCaGUGGGGG-------AGUUGCA- -5'
9370 5' -57 NC_002512.2 + 186237 0.68 0.868254
Target:  5'- aCCGaGGGCGAGGUC-CCggUCCUCGgucACGa -3'
miRNA:   3'- -GGC-CUCGUUCCAGuGG--GGGAGU---UGCa -5'
9370 5' -57 NC_002512.2 + 103981 0.68 0.882121
Target:  5'- gCCGGAGCu--GUCGCgCaCCCUgGACGc -3'
miRNA:   3'- -GGCCUCGuucCAGUG-G-GGGAgUUGCa -5'
9370 5' -57 NC_002512.2 + 103621 0.68 0.884798
Target:  5'- cCCGGuaccGCugGAGGUCggcuucggacacccgGCCCuCCUCGGCGg -3'
miRNA:   3'- -GGCCu---CG--UUCCAG---------------UGGG-GGAGUUGCa -5'
9370 5' -57 NC_002512.2 + 105705 0.68 0.88875
Target:  5'- cCCGGcggacgAGCAgccAGGUgCACuCCCgCUCGACGa -3'
miRNA:   3'- -GGCC------UCGU---UCCA-GUG-GGG-GAGUUGCa -5'
9370 5' -57 NC_002512.2 + 202087 0.67 0.895171
Target:  5'- aCGGGGCGccGGUCACCUCgUCcgaccGCGUc -3'
miRNA:   3'- gGCCUCGUu-CCAGUGGGGgAGu----UGCA- -5'
9370 5' -57 NC_002512.2 + 191350 0.67 0.895171
Target:  5'- aCGGGGguAGGUCGCCgcgcgaCCUUGGCu- -3'
miRNA:   3'- gGCCUCguUCCAGUGGg-----GGAGUUGca -5'
9370 5' -57 NC_002512.2 + 156932 0.67 0.901379
Target:  5'- -aGGAGCccacGGUCGCCaCCCUgGugGc -3'
miRNA:   3'- ggCCUCGuu--CCAGUGG-GGGAgUugCa -5'
9370 5' -57 NC_002512.2 + 147444 0.67 0.901379
Target:  5'- uCgGGAGCGGGaccgaCGCCCCCUCGuccccuccgccGCGg -3'
miRNA:   3'- -GgCCUCGUUCca---GUGGGGGAGU-----------UGCa -5'
9370 5' -57 NC_002512.2 + 189186 0.67 0.901379
Target:  5'- gCCGGcaAGCAcccAGGUCGCCgCgggcggcaugCUCGACGUc -3'
miRNA:   3'- -GGCC--UCGU---UCCAGUGGgG----------GAGUUGCA- -5'
9370 5' -57 NC_002512.2 + 128136 0.67 0.907373
Target:  5'- aCGGAGCGcccGGGcCACCaCCUC-GCGa -3'
miRNA:   3'- gGCCUCGU---UCCaGUGGgGGAGuUGCa -5'
9370 5' -57 NC_002512.2 + 108433 0.67 0.907373
Target:  5'- cCCGGGGCcgggggccggGGGGUCcCuCCCCgggCGGCGc -3'
miRNA:   3'- -GGCCUCG----------UUCCAGuG-GGGGa--GUUGCa -5'
9370 5' -57 NC_002512.2 + 220131 0.67 0.907373
Target:  5'- gCGGGGCGgcGGGUCcggcuccgccGCCCCCaagGGCGUc -3'
miRNA:   3'- gGCCUCGU--UCCAG----------UGGGGGag-UUGCA- -5'
9370 5' -57 NC_002512.2 + 197660 0.67 0.907373
Target:  5'- uCUGGcccGaCGAGGUggaCGCCCuCCUCAACGg -3'
miRNA:   3'- -GGCCu--C-GUUCCA---GUGGG-GGAGUUGCa -5'
9370 5' -57 NC_002512.2 + 131914 0.67 0.907373
Target:  5'- cCCGGGGCGuaccGG-CGCCCCUgcugCAcgggaGCGUa -3'
miRNA:   3'- -GGCCUCGUu---CCaGUGGGGGa---GU-----UGCA- -5'
9370 5' -57 NC_002512.2 + 216301 0.67 0.913151
Target:  5'- cCCGGGGacguGGGUCACCUgCaUCuGCGg -3'
miRNA:   3'- -GGCCUCgu--UCCAGUGGGgG-AGuUGCa -5'
9370 5' -57 NC_002512.2 + 191814 0.67 0.918164
Target:  5'- aCCGGGcacugacgcgcGCGGGGUCcuugcgcccucccACCCCUcCGGCGUc -3'
miRNA:   3'- -GGCCU-----------CGUUCCAG-------------UGGGGGaGUUGCA- -5'
9370 5' -57 NC_002512.2 + 98127 0.67 0.91871
Target:  5'- gCCGGGGCGcuGGUCgucgcggccGCCCgCCcCGGCGg -3'
miRNA:   3'- -GGCCUCGUu-CCAG---------UGGG-GGaGUUGCa -5'
9370 5' -57 NC_002512.2 + 123062 0.67 0.924049
Target:  5'- gCGGAagaggaggucGCGGcGGccUCGCCCCCUCccGACGUc -3'
miRNA:   3'- gGCCU----------CGUU-CC--AGUGGGGGAG--UUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.